PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014320

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HD-ZIP

Protein Properties

Length: 320aa MW: 36424.6 Da PI: 4.2162

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-22083	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.9e-19	94	147	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe ++++ +++ +LAk+lgL+ rq+ +WFqNrRa++k Lsa014320 94 KKRRLKADQVQFLEKSFETENKLEPDRKIQLAKELGLQPRQIAIWFQNRRARWK 147 566899***********************************************9 PP
2	HD-ZIP_I/II	125.2	2.9e-40	93	185	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+++qv++LE+sFe+e+kLep+rK +la+eLglqprq+a+WFqnrRAR+ktk+lEkdy++L+++y++lk++ e+L +e+e+L++e+++ Lsa014320 93 EKKRRLKADQVQFLEKSFETENKLEPDRKIQLAKELGLQPRQIAIWFQNRRARWKTKRLEKDYDVLQESYNELKANYENLLSEKEKLKSEVHD 185 69**************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.41E-18	82	150	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	89	149	IPR001356	Homeobox domain
SMART	SM00389	1.7E-18	92	153	IPR001356	Homeobox domain
CDD	cd00086	2.25E-17	94	150	No hit	No description
Pfam	PF00046	5.5E-16	94	147	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.3E-20	96	156	IPR009057	Homeodomain-like
PRINTS	PR00031	9.1E-6	120	129	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	124	147	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.1E-6	129	145	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.3E-13	149	190	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MAARSFLYGG DSGGGGGSGF NSVLVTNKRP PFSSSIPLDS HFVSGSTHSF AGARSMVSFD 60 QEGGNGSGRN FFQTFDQEDN GDDEYDDYFQ HPEKKRRLKA DQVQFLEKSF ETENKLEPDR 120 KIQLAKELGL QPRQIAIWFQ NRRARWKTKR LEKDYDVLQE SYNELKANYE NLLSEKEKLK 180 SEVHDLNDKL LLQEMEKGTS DSSSTKSPCE PLQQEQAADC LNDEDVGVRS DATESSSLQY 240 VDLLERGDSS YLFEQDQSDE SLDEEDKLEK MFVTTVSGYM LPKIENGDYP ELDVVNSSYL 300 EFPSHGEDED EDQPFGFWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	98	KKRRLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023728347.1	0.0	homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A2J6KSJ1	0.0	A0A2J6KSJ1_LACSA; Uncharacterized protein
STRING	POPTR_0015s07640.1	1e-101	(Populus trichocarpa)