PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014370
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 439aa    MW: 48625.4 Da    PI: 6.5566
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29955100PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-4956387PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     r++WT eE+e l+ +v+++G g Wk I    +      +R+  ++k++w++
        Lsa014370  5 RQKWTLEEEEALYYGVRKHGQGKWKVILTDPQfasalANRSNIDLKDKWRN 55
                     89************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.049162IPR017930Myb domain
SuperFamilySSF466891.35E-14358IPR009057Homeodomain-like
SMARTSM007172.7E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-12556IPR009057Homeodomain-like
PfamPF002491.7E-8555IPR001005SANT/Myb domain
CDDcd116601.38E-19655No hitNo description
PROSITE profilePS5150420.289271339IPR005818Linker histone H1/H5, domain H15
SMARTSM005263.9E-9271334IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.5E-10273345IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.6E-8275333IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.32E-11275347IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAKERQKWTL EEEEALYYGV RKHGQGKWKV ILTDPQFASA LANRSNIDLK DKWRNVSVNR  60
DKVRTPMLEG VTTTTTNNPP LNPPKVRTPL LEGVTTTTTT TNQPLNPLKV RTPLLEGVTT  120
TTNNNPPLNP LKVRTPLLEG VTNNNNNNPP LNPLKVRTPL LEGVTTTTTN QPLNPLKIRT  180
PLLEGVTTTT TTNQPLNPPK VRTPLLEGVT TTTTTNQPLN PLKVRTPLLE GVTTTITTNP  240
PMNYPKPLSV VHLVDYGGMS VPSSSTMHET TPQIYEKLIL EALSSIGDPN GSDTNAILSF  300
IEKNFPVPEN FERSVTSMLR RLVLTGKLEM VDNNFKYKGA SYGAKTFKRD DSKNDKVDDE  360
KQEAPDAPDS PIATETLEDA AFYAARLVSR AENVEQQAIE AVQKSDRIEK MVEESMAMLQ  420
LAEDLHEMCL KDGFVLLAL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759990.10.0telomere repeat-binding factor 5-like
TrEMBLA0A2J6LM420.0A0A2J6LM42_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-23MYB_related family protein