PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014380
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 253aa    MW: 28567.9 Da    PI: 7.9169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-54340PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.2e-2198149156
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                ++y+GVr+++ +grW+AeIrdp   g+rkr++lg+f+taeeAa  +++a+  l+g+
  Lsa014380  98 KKYRGVRRRP-WGRWAAEIRDP---GRRKRVWLGTFDTAEEAATVYDNAAVTLKGH 149
                59********.**********8...556**********************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.0E-727253IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.55E-3298156No hitNo description
PfamPF008471.4E-1399149IPR001471AP2/ERF domain
SMARTSM003808.2E-3799162IPR001471AP2/ERF domain
PROSITE profilePS5103224.52699156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-3199156IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2299157IPR016177DNA-binding domain
PRINTSPR003675.2E-11100111IPR001471AP2/ERF domain
PRINTSPR003675.2E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEVKSPSSVR SAVKFSEHVV RTNKFVQEES LAMKQRVVRI RLVDPYATDS SDDDDEGVMK  60
RVKKHVFEIN VNPPSSKFKR DRSRNRRHVR RSTGSMEKKY RGVRRRPWGR WAAEIRDPGR  120
RKRVWLGTFD TAEEAATVYD NAAVTLKGHN AVTNFPTGSV TETVIVQGKK PTVTTTSGGD  180
DDGQVHDGVL SPTSVLPFDD ELSPFAGLRY SDVDAFGFDI DLSINLPDFT VPAKYHTEEF  240
GDFDIDDFLV DVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2291156672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189106RRSTGSMEKKYRGVRRRP
2103122RRRPWGRWAAEIRDPGRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728849.10.0pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046824e-64PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2J6KRK70.0A0A2J6KRK7_LACSA; Uncharacterized protein
STRINGXP_008240070.12e-67(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-37cytokinin response factor 4