PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014383
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 219aa    MW: 23649.5 Da    PI: 6.5069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681992PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-10943PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-192978356
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++GVr ++ +gr+vAeIrdp +   ++r++lg+f++ae+Aa+a++aa++ l+g+
  Lsa014383 29 FRGVRKRP-WGRFVAEIRDPLK---KARVWLGTFDSAEDAARAYDAAARTLRGA 78
               8*******.**********743...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-352891IPR001471AP2/ERF domain
PfamPF008479.0E-132877IPR001471AP2/ERF domain
PROSITE profilePS5103223.132885IPR001471AP2/ERF domain
CDDcd000182.90E-192885No hitNo description
PRINTSPR003674.0E-102940IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-322985IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-222986IPR016177DNA-binding domain
PRINTSPR003674.0E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MRGGKGGAAA SKAALPVTVG SGSGTEIRFR GVRKRPWGRF VAEIRDPLKK ARVWLGTFDS  60
AEDAARAYDA AARTLRGAKA KTNFPLTIAS TAQHQQNLND RHPFFDSPEH EIIVPQRPTC  120
SGMSSTVESF SGPRPLTTAD VVLPRVHHPQ KQPAATDSCC DYCDSSSSVV VDEEDAGDIA  180
SSSFQKTMLP FDLNMPPPVD DVPFDSPIGD DLHCTELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-222990668ATERF1
3gcc_A5e-222990668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023744639.11e-161ethylene-responsive transcription factor 3-like
SwissprotQ9LDE44e-45ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A2J6JRU21e-160A0A2J6JRU2_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000373595e-64(Solanum tuberosum)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]