PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014410

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

M-type_MADS

Protein Properties

Length: 353aa MW: 40371.9 Da PI: 8.058

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-24054	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75	5.8e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en nrqvtfskRrngilKKA+ELSvLCd+++ +++fs+tgk Lsa014410 9 KRLENIGNRQVTFSKRRNGILKKAKELSVLCDIDIILLMFSPTGK 53 68899***************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-32	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.59	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-27	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.82E-27	2	82	No hit	No description
PRINTS	PR00404	1.1E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.4E-21	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MGRVKLKIKR LENIGNRQVT FSKRRNGILK KAKELSVLCD IDIILLMFSP TGKPTLFTGQ 60 RSNIDEVIAK FARLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFAGAS SQSAEDLSNH 120 AMMLRSQLSE LHKRLSYWSN PDKIENIEHL KQMEDSLRES LDRIRIHKEN FGQQKLIPLD 180 CTNQFQSGLH LPLMMTNTQE DQTLQWLPKN ENQNLILTDK QNYIPQRDGE CSGVSLSNYS 240 GLFTSKGIEM EKVDRSRQVV GGLAELCSTS NFPFSPFGNL NFPQTKEMKP DTSTNLQGFL 300 DYSINCNFEM PRNVYNDNLC NPWNPEPGPC PLPLIYGNSY SQQPDHLMSN NES

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MGRVKLKIKR LENIGNRQVT FSKRRNGILK KAKELSVLCD IDIILLMFSP TGKPTLFTGQ  60
RSNIDEVIAK FARLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFAGAS SQSAEDLSNH  120
AMMLRSQLSE LHKRLSYWSN PDKIENIEHL KQMEDSLRES LDRIRIHKEN FGQQKLIPLD  180
CTNQFQSGLH LPLMMTNTQE DQTLQWLPKN ENQNLILTDK QNYIPQRDGE CSGVSLSNYS  240
GLFTSKGIEM EKVDRSRQVV GGLAELCSTS NFPFSPFGNL NFPQTKEMKP DTSTNLQGFL  300
DYSINCNFEM PRNVYNDNLC NPWNPEPGPC PLPLIYGNSY SQQPDHLMSN NES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-15	1	92	1	90	MEF2C
5f28_B	4e-15	1	92	1	90	MEF2C
5f28_C	4e-15	1	92	1	90	MEF2C
5f28_D	4e-15	1	92	1	90	MEF2C
6byy_A	3e-15	1	92	1	90	MEF2 CHIMERA
6byy_B	3e-15	1	92	1	90	MEF2 CHIMERA
6byy_C	3e-15	1	92	1	90	MEF2 CHIMERA
6byy_D	3e-15	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023761277.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	3e-99	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A2J6LJC2	0.0	A0A2J6LJC2_LACSA; Uncharacterized protein
STRING	VIT_17s0000g06340.t01	1e-151	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-101	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]