PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014428

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 306aa MW: 34355.1 Da PI: 9.0048

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58681184	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.8	5.5e-33	2	88	42	128
NAM 42 vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++Pw+Lp+ ++ +ekew+f+++rdkky++g+r+nr+t+sgyWkatg d+ + + +++ +glkktLvfy+g+apkg +++W+m+eyrl Lsa014428 2 YDPWELPALAAIGEKEWFFYVPRDKKYRNGDRPNRVTTSGYWKATGADRMIRTDNSRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 88 69***8778899*********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.886	1	109	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-38	2	109	IPR003441	NAC domain
Pfam	PF02365	1.4E-12	17	88	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
XYDPWELPAL AAIGEKEWFF YVPRDKKYRN GDRPNRVTTS GYWKATGADR MIRTDNSRSI 60 GLKKTLVFYS GKAPKGIRSS WIMNEYRLPH HETERLQKAE ISLCRVYKRS GVEDHPSLPR 120 SLQTRSTSRT SNYHINQQSQ NSPSFNCFEG QSSHHTDEKP SDTTSPPPPA IVGTSLGLSN 180 PLNSSYNNVI ATPSSTIFPN SVDDLPRIIS SQRVLDTCPP SQLLNIHNYH LGDSSNYSPH 240 LFDNMLPQPQ QQQQLQPQLS SQALLALNNN LAGAGAGAVH VTFPERIWEW NSMLSEGSKD 300 LTAPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-37	2	109	57	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-37	2	109	57	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-37	2	109	57	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-37	2	109	57	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-37	2	109	60	168	NAC domain-containing protein 19
3swm_B	1e-37	2	109	60	168	NAC domain-containing protein 19
3swm_C	1e-37	2	109	60	168	NAC domain-containing protein 19
3swm_D	1e-37	2	109	60	168	NAC domain-containing protein 19
3swp_A	1e-37	2	109	60	168	NAC domain-containing protein 19
3swp_B	1e-37	2	109	60	168	NAC domain-containing protein 19
3swp_C	1e-37	2	109	60	168	NAC domain-containing protein 19
3swp_D	1e-37	2	109	60	168	NAC domain-containing protein 19
4dul_A	1e-37	2	109	57	165	NAC domain-containing protein 19
4dul_B	1e-37	2	109	57	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730496.1	0.0	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	2e-78	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2J6KMV8	0.0	A0A2J6KMV8_LACSA; Uncharacterized protein
STRING	POPTR_0003s03670.1	4e-93	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-74	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]