PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014465
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 150aa    MW: 16875.6 Da    PI: 9.4875
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58671475PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-2766PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-11411151188
                HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
         B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                +++ +lv+p++  e+   +     +  ++    +g++W++ +  +++++r+   + W +Fv +n+L +gD +vF+l+ g+ +
  Lsa014465  41 GRRFQLVIPRELSEKLptST---VPASIV---CHGKVWDLLYHGDQTKRRF-GNEAWGKFVTDNKLVAGDACVFELMeGSlM 115
                67889999999998884322...232344...69********778888886.678********************8733333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-1427127IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-1428128IPR015300DNA-binding pseudobarrel domain
CDDcd100179.46E-1529127No hitNo description
PROSITE profilePS5086310.71531129IPR003340B3 DNA binding domain
SMARTSM010190.006431129IPR003340B3 DNA binding domain
PfamPF023622.9E-1040112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDPSPRTGNL QTQLDPQADA AFWPLSGKPY FYVVLGKLIY GRRFQLVIPR ELSEKLPTST  60
VPASIVCHGK VWDLLYHGDQ TKRRFGNEAW GKFVTDNKLV AGDACVFELM EGSLMSRIVK  120
FKVQILRSGF PSKLLEKAEG FNMNNPIAID
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742503.11e-109B3 domain-containing protein Os04g0386900-like isoform X2
TrEMBLA0A2J6MAS61e-108A0A2J6MAS6_LACSA; Uncharacterized protein