PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014522
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 337aa    MW: 37819.9 Da    PI: 8.695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-30926PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.2e-28135191259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +DgynWrKYGqK+vk se prsYYrCt+ +Cpv+kk+ +   d+++ ei+Y+g+Hnhe
  Lsa014522 135 SDGYNWRKYGQKQVKASELPRSYYRCTQVNCPVTKKIGHFL-DGNTSEIIYSGRHNHE 191
                7**************************************99.***************8 PP
2WRKY97.39.8e-31247305159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDg++WrKYGqK+vkg+ +prsYYrCt+ gC+v+k+ver+ +d k v++tYeg+H+h+
  Lsa014522 247 LDDGFKWRKYGQKVVKGNIYPRSYYRCTYVGCKVRKHVERALSDLKSVVTTYEGRHKHD 305
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.841129193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-25130193IPR003657WRKY domain
SuperFamilySSF1182901.31E-22132193IPR003657WRKY domain
SMARTSM007742.4E-27134192IPR003657WRKY domain
PfamPF031064.3E-21136191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-33232307IPR003657WRKY domain
SuperFamilySSF1182909.29E-28239307IPR003657WRKY domain
PROSITE profilePS5081133.935242307IPR003657WRKY domain
SMARTSM007741.7E-34247306IPR003657WRKY domain
PfamPF031063.0E-23248305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAETGGDSAP PPRRIPPMIT LPPRSSSDTF LTGISPGPMT LVSNFFSDHY PDTDIYSLSQ  60
LLAGVLPSPA AENSPAPPLY NDYLSLLSPE ESRTSQTSDP YVDNSSQIRS PETVSDSESG  120
DSKPERVVAL AKPASDGYNW RKYGQKQVKA SELPRSYYRC TQVNCPVTKK IGHFLDGNTS  180
EIIYSGRHNH EPPQLHKPAV VADEQAYELM PKRRKTEVKC VDRSSSCRVV VTEPKIVVQT  240
RSEIDILDDG FKWRKYGQKV VKGNIYPRSY YRCTYVGCKV RKHVERALSD LKSVVTTYEG  300
RHKHDIPVVV KPSSNNEINF KAEIPFLLQL KEEKIMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-33238308878Probable WRKY transcription factor 4
2lex_A2e-33238308878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210216PKRRKTE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762271.10.0probable WRKY transcription factor 2
SwissprotQ9ZQ706e-70WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2J6LHQ00.0A0A2J6LHQ0_LACSA; Uncharacterized protein
STRINGLus100371311e-83(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-69WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]