PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014523
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Whirly
Protein Properties Length: 252aa    MW: 28016 Da    PI: 9.5045
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682852PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-7335PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly217.11.6e-67772151139
     Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100
                s+yk+kaal+v+++ p+f  ldsg++kl+++G++ll++a+++++r+ydW++kq+f+ls+te++++++l++k+sceffhdp++++s+eG+vrk+lkvePlp
  Lsa014523  77 SIYKGKAALTVEPRPPEFAPLDSGAFKLTKEGFVLLQFAPSAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPFKGKSDEGRVRKVLKVEPLP 176
                7*************************************************************************************************** PP

     Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                dGsG+f+nlsv+n+l++ +es+++Pv+kaefa+l s+++
  Lsa014523 177 DGSGHFFNLSVQNKLINMDESIYIPVTKAEFAILVSAFN 215
                **********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.8E-7767237IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544473.14E-7770252IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.5E-6178212IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLNLSLSSTQ SGYIIQNPKS PFILNPLLSS PPTIKFINPS SRKLSLKCQY SDQQQRPDAS  60
SYSQPREDAP KVFIGHSIYK GKAALTVEPR PPEFAPLDSG AFKLTKEGFV LLQFAPSAGV  120
RQYDWSRKQV FSLSVTEIGS IISLGAKDSC EFFHDPFKGK SDEGRVRKVL KVEPLPDGSG  180
HFFNLSVQNK LINMDESIYI PVTKAEFAIL VSAFNFVVPY LLGWHTFVNS IKPQDSTRLS  240
NGNPRSGADL EW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-1197025236218p24: plant transcriptional regulator PBF-2
1l3a_B1e-1197025236218p24: plant transcriptional regulator PBF-2
1l3a_C1e-1197025236218p24: plant transcriptional regulator PBF-2
1l3a_D1e-1197025236218p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742985.10.0single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL851e-121WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A2J6JVE60.0A0A2J6JVE6_LACSA; Uncharacterized protein
STRINGXP_009599234.11e-124(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-116ssDNA-binding transcriptional regulator