PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014526
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 290aa    MW: 31811.2 Da    PI: 6.4198
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58680234PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.9e-06161183123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C++Cg +F+  + +++Hi  H
  Lsa014526 161 YQCHICGIRFKLEERFEKHIEWH 183
                9*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.533161188IPR007087Zinc finger, C2H2
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
VSGKSPPVQP PAHHRPPPPS LPSPVQSRAA TQPQKNTASR HPILPPPVTT TSKSPVTDTT  60
TTAAAAATGK QPPPLVSSLL STLIAKGIIS ASNPDPPPAV SPPSPPAPVV VRSPVLLSTN  120
NEPPSVSDIK SIIGFDFKPE IIRRSNPAVI SDLIDDLHLP YQCHICGIRF KLEERFEKHI  180
EWHNRKYPPS RRWFINSDEW VKEKGGERMV AAEIGGERMV VADESQCVCV WCGEVFEDFY  240
SEEMEKWMFR RAIYLGVKGG DIGPIVHEDC ISENSHFDLG LSNDVKSEEV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749740.10.0polyadenylation and cleavage factor homolog 4-like
TrEMBLA0A2J6JFL70.0A0A2J6JFL7_LACSA; Uncharacterized protein
STRINGVIT_08s0007g03880.t014e-54(Vitis vinifera)