PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa014565

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Trihelix

Protein Properties

Length: 707aa MW: 79071.9 Da PI: 7.1102

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58686540	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-50751	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.1	6.8e-30	62	145	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ ++r+++lk+plW+evs+k++e g++rs+k+Ckek+en+ k++k++keg+ ++ + +t+++fdql+ Lsa014565 62 RWPRQETLALLKIRSDMDVAFRDSSLKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTSK--ADGKTYRFFDQLQ 145 8******************************************************************96..66678****98 PP
2	trihelix	104.1	1e-32	454	539	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k e+ aLi++r+ ++++++++ k+plWee+s++m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql+a Lsa014565 454 RWPKAEINALIKLRTTLDTKYQESGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYYKKVKESSKKR-PEDSKTCPYFHQLDA 539 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.888	55	119	IPR017877	Myb-like domain
SMART	SM00717	4.2E-4	59	121	IPR001005	SANT/Myb domain
CDD	cd12203	1.81E-25	61	126	No hit	No description
Pfam	PF13837	2.1E-19	61	147	No hit	No description
SMART	SM00717	6.5E-5	451	513	IPR001005	SANT/Myb domain
CDD	cd12203	2.58E-29	453	518	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-4	453	510	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.143	453	511	IPR017877	Myb-like domain
Pfam	PF13837	3.4E-23	454	540	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MLQGVSPGIG NSGEAAATAV SVQPNETAAA SAELASGGGG GGFSEDERGR IEEGGRNSGG 60 NRWPRQETLA LLKIRSDMDV AFRDSSLKGP LWDEVSRKLA ELGYHRSAKK CKEKFENVYK 120 YHKRTKEGRT SKADGKTYRF FDQLQALEAN PTAGSHHQQP LSLPPPQPVL SKPPPQVSTM 180 PNTSTITQIL PSVVTPVNIS VSHQNNVDPI SVAAPAVAMP SMNINHVGGF PFSQLNISAS 240 TNSSSSSTSS DDEPPERRRN RKRKWKEFFG RLMKEVIDKQ EELQSKFLDT LERRERDRMA 300 REEAWRIQEM AKMKREHDPL VQERSMVAAK DAAVITFLQK ITEQNPSTVI PQMPAMQLLQ 360 QQQQQNQPPP PLPPPSSVQP PPPMQQQHQQ QSQPPPPPPP QVLQQQQQPI SPLSAAVPLP 420 APVSLSTPAP PPPVVRNLDN GGGGENMLQP SPSRWPKAEI NALIKLRTTL DTKYQESGPK 480 GPLWEEISSA MKKLGYNRNA KRCKEKWENI NKYYKKVKES SKKRPEDSKT CPYFHQLDAI 540 YREKATSSNN NNNNNSNPAF AVKPENQMAP SWARPEQQWP LPAVVQEQHH HLQQQHHHHQ 600 QQQQQQQQQR HNQQMKTNES TGIEDHQHAD DDDDYDEEDE DDDEEEGEGE GEGGEYEIVP 660 NKTSSMAAVX MMEIYRQWKS NKHLGCTANV GHELQKMSDG FAGRVAG

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MLQGVSPGIG NSGEAAATAV SVQPNETAAA SAELASGGGG GGFSEDERGR IEEGGRNSGG  60
NRWPRQETLA LLKIRSDMDV AFRDSSLKGP LWDEVSRKLA ELGYHRSAKK CKEKFENVYK  120
YHKRTKEGRT SKADGKTYRF FDQLQALEAN PTAGSHHQQP LSLPPPQPVL SKPPPQVSTM  180
PNTSTITQIL PSVVTPVNIS VSHQNNVDPI SVAAPAVAMP SMNINHVGGF PFSQLNISAS  240
TNSSSSSTSS DDEPPERRRN RKRKWKEFFG RLMKEVIDKQ EELQSKFLDT LERRERDRMA  300
REEAWRIQEM AKMKREHDPL VQERSMVAAK DAAVITFLQK ITEQNPSTVI PQMPAMQLLQ  360
QQQQQNQPPP PLPPPSSVQP PPPMQQQHQQ QSQPPPPPPP QVLQQQQQPI SPLSAAVPLP  420
APVSLSTPAP PPPVVRNLDN GGGGENMLQP SPSRWPKAEI NALIKLRTTL DTKYQESGPK  480
GPLWEEISSA MKKLGYNRNA KRCKEKWENI NKYYKKVKES SKKRPEDSKT CPYFHQLDAI  540
YREKATSSNN NNNNNSNPAF AVKPENQMAP SWARPEQQWP LPAVVQEQHH HLQQQHHHHQ  600
QQQQQQQQQR HNQQMKTNES TGIEDHQHAD DDDDYDEEDE DDDEEEGEGE GEGGEYEIVP  660
NKTSSMAAVX MMEIYRQWKS NKHLGCTANV GHELQKMSDG FAGRVAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	257	263	RRNRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023742465.1	0.0	trihelix transcription factor GT-2-like isoform X1
TrEMBL	A0A2J6JWL0	0.0	A0A2J6JWL0_LACSA; Uncharacterized protein
STRING	XP_009618661.1	1e-177	(Nicotiana tomentosiformis)