PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014713
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 238aa    MW: 25889.9 Da    PI: 10.1018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-27279PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.2e-212980156
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Lsa014713 29 PHFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 80
               689*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-142979IPR001471AP2/ERF domain
CDDcd000182.30E-192989No hitNo description
SMARTSM003801.2E-373093IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-223088IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-323088IPR001471AP2/ERF domain
PROSITE profilePS5103223.8943087IPR001471AP2/ERF domain
PRINTSPR003674.9E-113142IPR001471AP2/ERF domain
PRINTSPR003674.9E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAPKERSTGA GKPNAHPAGL GVSVGAKEPH FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF  60
DTAEEAARAY DAAAREFRGA KAKTNFPTHD DLGLLKLQTC PNQRSPSQTS TVESSSRDPE  120
PVVPLLDLNL SYGSPPPFVV QFPYNHHHNH NQPRFSTVPG AGFYSPPANQ MFYFDGGSKP  180
SARHITNCDR SSIIFRQSAS VAKSDDSASS SVVDLKPSPP TRRVGVTIDL NFPPPVES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-232193578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746838.11e-143ethylene-responsive transcription factor 4-like
TrEMBLA0A2J6JMB51e-142A0A2J6JMB5_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.13e-24ethylene responsive element binding factor 4