PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014934
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 357aa    MW: 40982.6 Da    PI: 4.8617
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683356PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.57.3e-5571361129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL +  ++   e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v++ k 
  Lsa014934   7 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLIErcRIGYeEQTEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYE-KL 104
                69****************************.9***************743433332667**************************************.99 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                +l+g++ktLvfykgrap+g+ktdW+mheyrle
  Lsa014934 105 RLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 136
                9*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-595156IPR003441NAC domain
PROSITE profilePS5100559.1897156IPR003441NAC domain
PfamPF023659.5E-298135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDQSSCVPPG FRFHPTDEEL VGYYLRKKVA SQKIDLDVIR DIDLYRIEPW DLIERCRIGY  60
EEQTEWYFFS HKDKKYPTGT RTNRATMAGF WKATGRDKAV YEKLRLIGMR KTLVFYKGRA  120
PNGQKTDWIM HEYRLESEEN GPPQEEGWVV CRAFKKRSTG QTKTTEGWES NFFYDDSSRM  180
DPIDYITSQP SSSIFSQSFM CKQELEAVEN LNFVQCDQYV QLPQLESPSL PLIEKPSSIS  240
LVSSSENNDL EDDLQGGRNI HNNKISMNNI DNVDKVTDWR ALDKFVASQL SQEDRYGIGE  300
GLSSSFQGKE NSNFSYMFME RGREEEDGGG GGGGKLNVLL SSSHQDHSDI GICIFDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-50716117170NO APICAL MERISTEM PROTEIN
1ut4_B2e-50716117170NO APICAL MERISTEM PROTEIN
1ut7_A2e-50716117170NO APICAL MERISTEM PROTEIN
1ut7_B2e-50716117170NO APICAL MERISTEM PROTEIN
3ulx_A2e-50715815170Stress-induced transcription factor NAC1
4dul_A2e-50716117170NAC domain-containing protein 19
4dul_B2e-50716117170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749237.10.0NAC domain-containing protein 37-like
SwissprotQ9SL411e-150NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A2J6M9690.0A0A2J6M969_LACSA; Uncharacterized protein
STRINGVIT_04s0023g03110.t011e-172(Vitis vinifera)
STRINGEOX908921e-171(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-133vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]