PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014965
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 163aa    MW: 18653.1 Da    PI: 9.9912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58667824PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-204595256
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +y+GVr ++ +gr++AeIrd ++    + r +lg+f+taeeAa+a+++a+ +l+g+
  Lsa014965 45 HYRGVRKRP-WGRFAAEIRDpWK----KSRRWLGTFDTAEEAARAYDEAAFSLRGA 95
               69*******.**********883....5999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.62E-2245104IPR016177DNA-binding domain
SMARTSM003804.7E-3445108IPR001471AP2/ERF domain
CDDcd000188.59E-3145101No hitNo description
PfamPF008472.6E-134594IPR001471AP2/ERF domain
PROSITE profilePS5103222.81345102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3145102IPR001471AP2/ERF domain
PRINTSPR003679.9E-114657IPR001471AP2/ERF domain
PRINTSPR003679.9E-116884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MMIDTLHHDH RRHLFSDATK DEAPVTTPTV PAPASHKHKP RKEFHYRGVR KRPWGRFAAE  60
IRDPWKKSRR WLGTFDTAEE AARAYDEAAF SLRGAKAKMN FCVSLAAFSP PVAEKKDVQS  120
NFSALCYHPS SNDSVNLDSE EDRKLMTSRK PFMFDLNLPA PLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2245101562ATERF1
3gcc_A5e-2245101562ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766548.11e-119ethylene-responsive transcription factor 3-like
TrEMBLA0A2J6L7X41e-117A0A2J6L7X4_LACSA; Uncharacterized protein
STRINGXP_004493753.11e-37(Cicer arietinum)
STRINGXP_009618026.11e-37(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-22ERF domain protein 12