PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015065

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

VOZ

Protein Properties

Length: 473aa MW: 52661 Da PI: 5.3895

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58690510	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	406.5	5.4e-125	194	417	1	217
VOZ 1 pppsaflgpkcalwdctrpaqg.......sewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 pppsaflgpkcalwdc+rpaqg + w+ dycss+ha++a neg g+tpv+rpkgi+lkd+llfaalsak+qgk+vg+pecegaatakspwna+ Lsa015065 194 PPPSAFLGPKCALWDCPRPAQGwcsdrpvQGWFPDYCSSLHAAIAQNEGRFGMTPVIRPKGIELKDTLLFAALSAKTQGKDVGVPECEGAATAKSPWNAP 293 89*****************955444434699*************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdek 193 elfdls++egetirewlffdkprrafesgnrkqrslpdy+grgwhesrkqv++e g lkrsyymdpqp++ +ewhlyeyei+++d +alyrlelklvd+k Lsa015065 294 ELFDLSVFEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVINESGWLKRSYYMDPQPMKFLEWHLYEYEISKCDVCALYRLELKLVDGK 393 ************************************************************************************************ PP VOZ 194 ksakgkvskdsladlqkklgrlta 217 ks+kgk+++dsladlqk++grlta Lsa015065 394 KSPKGKIANDSLADLQKQMGRLTA 417 ********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MGKGTKSKSG SHQIFKDRAK NRVEDLHGMF TDLQSARKES RSIDVAVLEE QVNQMLKEWK 60 NELNEPSPAS SLQQGASVGP YSPDISRLLQ LCDEEDDATS GLAAPKPDPD NGLQGFTVNH 120 TSQEQSFQLL DQCKGSPSGV NNTDITNQLD YFSFDLPHDF EQNFFTGIDG MGLCTRGEDT 180 SSPQITTFLP TLSPPPSAFL GPKCALWDCP RPAQGWCSDR PVQGWFPDYC SSLHAAIAQN 240 EGRFGMTPVI RPKGIELKDT LLFAALSAKT QGKDVGVPEC EGAATAKSPW NAPELFDLSV 300 FEGETIREWL FFDKPRRAFE SGNRKQRSLP DYNGRGWHES RKQVINESGW LKRSYYMDPQ 360 PMKFLEWHLY EYEISKCDVC ALYRLELKLV DGKKSPKGKI ANDSLADLQK QMGRLTAEFP 420 LDNSYNNKRS VKGRGKGNLK DKSGGATVYP MVASDDGAPF NYLVDDVGGY YLT

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MGKGTKSKSG SHQIFKDRAK NRVEDLHGMF TDLQSARKES RSIDVAVLEE QVNQMLKEWK  60
NELNEPSPAS SLQQGASVGP YSPDISRLLQ LCDEEDDATS GLAAPKPDPD NGLQGFTVNH  120
TSQEQSFQLL DQCKGSPSGV NNTDITNQLD YFSFDLPHDF EQNFFTGIDG MGLCTRGEDT  180
SSPQITTFLP TLSPPPSAFL GPKCALWDCP RPAQGWCSDR PVQGWFPDYC SSLHAAIAQN  240
EGRFGMTPVI RPKGIELKDT LLFAALSAKT QGKDVGVPEC EGAATAKSPW NAPELFDLSV  300
FEGETIREWL FFDKPRRAFE SGNRKQRSLP DYNGRGWHES RKQVINESGW LKRSYYMDPQ  360
PMKFLEWHLY EYEISKCDVC ALYRLELKLV DGKKSPKGKI ANDSLADLQK QMGRLTAEFP  420
LDNSYNNKRS VKGRGKGNLK DKSGGATVYP MVASDDGAPF NYLVDDVGGY YLT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023746822.1	0.0	transcription factor VOZ1
Refseq	XP_023746823.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2J6JMA9	0.0	A0A2J6JMA9_LACSA; Uncharacterized protein
STRING	VIT_10s0003g00500.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]