PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015126
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 240aa    MW: 27486.8 Da    PI: 8.1962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58676828PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-2081130356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                y+G+r++  +g+W+AeIrdp     +  r++lg++ t+eeAaka+++a+++++g+
  Lsa015126  81 YRGIRRRQ-WGKWAAEIRDPQ----QgVRVWLGTYNTPEEAAKAYDEAARRIRGN 130
                9****887.**********94....25*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-2280138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-3280137IPR001471AP2/ERF domain
SMARTSM003801.2E-3580143IPR001471AP2/ERF domain
PROSITE profilePS5103223.78880137IPR001471AP2/ERF domain
CDDcd000182.33E-3081136No hitNo description
PRINTSPR003672.7E-108192IPR001471AP2/ERF domain
PfamPF008471.3E-1381129IPR001471AP2/ERF domain
PRINTSPR003672.7E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MCGGAVISDI DPFVKRSRKV NANDLWNELD TYNRFAWNIK PPSPVRNRTT MNDYTPNSNQ  60
GTTKQTEKPM EKKSKPRKNL YRGIRRRQWG KWAAEIRDPQ QGVRVWLGTY NTPEEAAKAY  120
DEAARRIRGN KAKLNFPPPY TPPPAKKLCV ETTDSNLSIN YEPPSPYEFK ATTESTQPMA  180
HGQMLPPPLD YGGLHRHPAV DEHEFKEQIL NLETFLGLEH ESTQFDESGD LWALDDFPAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19811401575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023734095.10.0ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A2J6KEW51e-180A0A2J6KEW5_LACSA; Uncharacterized protein
STRINGGorai.011G193600.16e-56(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.18e-45ethylene-responsive element binding protein