PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015221

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 276aa MW: 31041.3 Da PI: 6.878

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S32122551	PU_ref	Unigene	View CDS
gnl\|UG\|Lsa#S58691579	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-50017	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.7	3.6e-15	14	59	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+W+ eEd+ll + ++ +G g+W++ +++ g+ R++k+c++rw + Lsa015221 14 RGAWSDEEDKLLTQHIHTHGEGQWRSLPSKAGLLRCGKSCRLRWMN 59 89****************************99********98 PP
2	Myb_DNA-binding	52.6	1.1e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E +++v+++ +G++ W+ Ia +++ gRt++++k++w+++l Lsa015221 67 RGNFTDDENDIIVRLHSVHGNR-WSFIATELP-GRTDNEIKNHWNSHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.263	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.62E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-13	14	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-21	15	68	IPR009057	Homeodomain-like
CDD	cd00167	3.61E-9	16	61	No hit	No description
PROSITE profile	PS51294	26.83	62	116	IPR017930	Myb domain
SMART	SM00717	1.3E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	1.41E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MGRAPCCAKV GLHRGAWSDE EDKLLTQHIH THGEGQWRSL PSKAGLLRCG KSCRLRWMNR 60 LRPGIKRGNF TDDENDIIVR LHSVHGNRWS FIATELPGRT DNEIKNHWNS HLKRKLRGGD 120 VDGDENQEDF SNNNKKPKKK RKTNQKSTKS KITEKPKEII SHPAASSSSS SQSASLTLRK 180 NHGFDSVVMS GGASSSSTTT SDQGETDLLA TDFSWPNWTP LFEMEVAATM DAHHDHHQDL 240 PMDACDLLIS NDDETXMLEK LYCEYLNLLE DGDDCV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-26	12	116	5	108	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023745613.1	0.0	transcription factor MYB8-like
TrEMBL	A0A2J6JPX5	0.0	A0A2J6JPX5_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	8e-60	myb domain protein 111