PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015306
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NF-YB
Protein Properties Length: 151aa    MW: 16776.7 Da    PI: 7.0294
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58672626PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB157.32.6e-49398297
      NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                e+d++lP+anv+rimk++lP  akisk+aket+qec+sefisfvt+easdkc++e+rkt+ngdd++wal++lGf+dy +++  yl+k+re+e+++
  Lsa015306  3 DEHDKLLPVANVGRIMKRILPPTAKISKEAKETIQECASEFISFVTGEASDKCHKENRKTVNGDDICWALGSLGFDDYSQAIARYLHKHREFERHR 98
               689******************************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.0E-462121IPR009072Histone-fold
SuperFamilySSF471139.28E-376116IPR009072Histone-fold
PfamPF008084.5E-26972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.5E-163654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.5E-165573No hitNo description
PRINTSPR006151.5E-167492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MVDEHDKLLP VANVGRIMKR ILPPTAKISK EAKETIQECA SEFISFVTGE ASDKCHKENR  60
KTVNGDDICW ALGSLGFDDY SQAIARYLHK HREFERHRAS AAAASSSAAL DASNKTNIVN  120
SNDEATAREA STSINCKDRL YYPNTSPLEF R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A5e-39293697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731163.11e-110nuclear transcription factor Y subunit B-4-like
SwissprotO822488e-51NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2J6KLG91e-108A0A2J6KLG9_LACSA; Uncharacterized protein
STRINGcassava4.1_026425m1e-61(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-52nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]