PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015345

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 186aa MW: 21236.1 Da PI: 7.2592

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58674659	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	5e-11	11	63	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 r+ +E++RR +++ +++L +l+P+ + +s+ s + L++A +YIk+Lq Lsa015345 11 RVDRRTVEKNRRIHMKALYSKLHSLVPHnS---SSREvISLPDQLQEAANYIKKLQ 63 5566789*******************44...88888***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.71E-7	7	67	No hit	No description
SuperFamily	SSF47459	1.44E-10	9	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.395	9	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-10	11	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-7	14	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0068	15	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MEFNPTSSSS RVDRRTVEKN RRIHMKALYS KLHSLVPHNS SSREVISLPD QLQEAANYIK 60 KLQIKLEKMN EEKDNLMGIQ KLEINHEDKI KNSNLMVGQQ RIPRIDVRGT GSSLEAILIT 120 GVDFQFLFSE TIRVIHEEGF DVINATFSIV NDTVFHTIHA QIGENYAQEN GVSRITERLN 180 SIAYGI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023768864.1	1e-135	transcription factor bHLH162
TrEMBL	A0A2J6MET4	1e-133	A0A2J6MET4_LACSA; Uncharacterized protein
STRING	XP_010108177.1	1e-68	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-45	bHLH family protein