PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015373
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 346aa    MW: 39591.2 Da    PI: 5.252
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29947803PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-9617PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS242.81.4e-74133941373
       GRAS  41 laayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg 138
                la+ f++AL +r +r +++ ++    +++    + + +++++l  ++++ P+++f++ + N+aI +a++g+ +vHi+Df+i++++QWp+L++aLa+Rpeg
  Lsa015373   1 LASWFLRALISRASRVCPTPMNFNGGRSAF---QRRLMSVTELagYVDLIPWHRFGFCASNSAIFKAIQGCPKVHILDFSITHCMQWPTLIDALAKRPEG 97 
                6899***********666666544333332...344444444466******************************************************* PP

       GRAS 139 ppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.....vakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserd 225
                ppslRi + +    +    +  +ee+g rL++fA+  +vpfefnv+     ++++  ++++e L +++     +Eal++n++  l +++    +++s +d
  Lsa015373  98 PPSLRISVPSWRPLVppfLNVLTEEVGIRLTNFANFRNVPFEFNVIdvspsIEESSLNFNYEFLLTQEnlvqnDEALVINCQNWLRYMP----DIASSKD 193
                ******99887555588889999***********************877765556666777777555455556***************9....5666668 PP

       GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                ++L++vk+l+P+++++v++++d++s+s++ r++ ++++ +  fd+ e+ lp++s +r+ +E+  +g +i+n++  eg++r+er e+ +k ++r+++ GF 
  Lsa015373 194 SFLEIVKTLNPRIITIVDEDSDLGSSSLASRITTCFNFLWIPFDASETFLPKDSFQRMEYEAD-IGHKIENIIGFEGRQRIERLESGAKFSQRMRNLGFF 292
                9**************************************************************.************************************ PP

       GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                +vp++e+  +++k ll +++  g+ ++ e++ +vl+Wk+++ v ++aW
  Lsa015373 293 SVPFGEDSINEVKFLLDEHA-SGWGMKTEEDMIVLTWKGHNSVYATAW 339
                ********************.77888999999**************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.9E-721339IPR005202Transcription factor GRAS
PROSITE profilePS5098538.9641321IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
LASWFLRALI SRASRVCPTP MNFNGGRSAF QRRLMSVTEL AGYVDLIPWH RFGFCASNSA  60
IFKAIQGCPK VHILDFSITH CMQWPTLIDA LAKRPEGPPS LRISVPSWRP LVPPFLNVLT  120
EEVGIRLTNF ANFRNVPFEF NVIDVSPSIE ESSLNFNYEF LLTQENLVQN DEALVINCQN  180
WLRYMPDIAS SKDSFLEIVK TLNPRIITIV DEDSDLGSSS LASRITTCFN FLWIPFDASE  240
TFLPKDSFQR MEYEADIGHK IENIIGFEGR QRIERLESGA KFSQRMRNLG FFSVPFGEDS  300
INEVKFLLDE HASGWGMKTE EDMIVLTWKG HNSVYATAWF PYKFDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-461341127474Protein SHORT-ROOT
5b3h_B7e-47134173420Protein SHORT-ROOT
5b3h_E7e-47134173420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023750124.10.0scarecrow-like protein 32
TrEMBLA0A2J6M8H60.0A0A2J6M8H6_LACSA; Uncharacterized protein
STRINGGorai.013G072100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-100GRAS family protein