PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015449

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 278aa MW: 31398 Da PI: 5.0369

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58682876	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.2e-11	154	202	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+++ ++rrRR ri +++ L +llP++ k +K i+ +eYIk+Lq Lsa015449 154 RQKATDADRRRRTRIAASLDALEDLLPQP-----KEGNKTNIVDDCIEYIKYLQ 202 889999*********************.....679**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-10	150	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-11	151	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.884	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-8	154	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-4	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDEHVVQNDC DLQLSSSTLE GNFNYAPHLG ESSLYQHITK AEDCDSYSAP QWIGYQQMPP 60 YYVEYLVGNG ISDMQGEIPH DTNGIGCSFT SEESFLSMEA HQVRQSRCQH EEILANNFRN 120 TQHQICYQKQ GLDTAAQHKP NMSGITTSRR TYMRQKATDA DRRRRTRIAA SLDALEDLLP 180 QPKEGNKTNI VDDCIEYIKY LQLHMKELSQ NRLVGEPTSN HLTYLEGYGA YLVDEKTATA 240 SGPLEEMLGN LMETSPSAAI KLLESRGLYM MPINARSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023738468.1	0.0	transcription factor bHLH7-like
TrEMBL	A0A2J6K578	0.0	A0A2J6K578_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	5e-11	LJRHL1-like 2