PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015455

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 350aa MW: 38782.6 Da PI: 8.8864

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685044	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-5597	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.8	5.2e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelvv+yLkk++++++l++ +i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++ ++++ Lsa015455 15 LPPGFRFHPTDEELVVHYLKKRAASTPLPV-AIIAEIDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAANSGYWKATGTDKPVMTSgGTQK 113 79**************************.88***********988899************************************977788 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+ pkg+kt+W+mheyrl Lsa015455 114 VGVKKALVFYGGKPPKGVKTNWIMHEYRL 142 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-65	8	176	IPR003441	NAC domain
PROSITE profile	PS51005	61.907	15	176	IPR003441	NAC domain
Pfam	PF02365	6.6E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MESTDSSTGS QLLQLPPGFR FHPTDEELVV HYLKKRAAST PLPVAIIAEI DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGARPNRA ANSGYWKATG TDKPVMTSGG TQKVGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RLTDGKTISK PHGCDPTKQK GSLRLDDWVL CRIYKKNNLQ 180 RPMDSDGSDH LHNMNGMLSS IPPSISLAGG HQGTIVKQTA GVGYNAMMEN HEHNLMFDAR 240 INSNDTDTNT SNLLPMKRSM PGLFWNEDAG AGAGNTGNST STYTKRFLTE SNSDVSVMAT 300 RNNEENSGSI ASLLSQLPQT QQMQPQAMLG SLEDGVFRQP YQLPGINWYS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MESTDSSTGS QLLQLPPGFR FHPTDEELVV HYLKKRAAST PLPVAIIAEI DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGARPNRA ANSGYWKATG TDKPVMTSGG TQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RLTDGKTISK PHGCDPTKQK GSLRLDDWVL CRIYKKNNLQ  180
RPMDSDGSDH LHNMNGMLSS IPPSISLAGG HQGTIVKQTA GVGYNAMMEN HEHNLMFDAR  240
INSNDTDTNT SNLLPMKRSM PGLFWNEDAG AGAGNTGNST STYTKRFLTE SNSDVSVMAT  300
RNNEENSGSI ASLLSQLPQT QQMQPQAMLG SLEDGVFRQP YQLPGINWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-77	13	178	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-77	13	178	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-77	13	178	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-77	13	178	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-77	13	178	18	170	NAC domain-containing protein 19
3swm_B	2e-77	13	178	18	170	NAC domain-containing protein 19
3swm_C	2e-77	13	178	18	170	NAC domain-containing protein 19
3swm_D	2e-77	13	178	18	170	NAC domain-containing protein 19
3swp_A	2e-77	13	178	18	170	NAC domain-containing protein 19
3swp_B	2e-77	13	178	18	170	NAC domain-containing protein 19
3swp_C	2e-77	13	178	18	170	NAC domain-containing protein 19
3swp_D	2e-77	13	178	18	170	NAC domain-containing protein 19
4dul_A	2e-77	13	178	15	167	NAC domain-containing protein 19
4dul_B	2e-77	13	178	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023756346.1	0.0	NAC transcription factor 25-like
Swissprot	Q9LD44	1e-109	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2J6LUQ8	0.0	A0A2J6LUQ8_LACSA; Uncharacterized protein
STRING	EOY12852	1e-158	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-107	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]