PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015488

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 249aa MW: 28279.7 Da PI: 7.2358

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58690045	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d+vk++G g W+ + + g++R++k+c++rw++yl Lsa015488 14 RGSWTASEDKILSDYVKLHGEGKWRQLPIKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	47.5	4e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Lsa015488 67 RGNISCDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 5677779*************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.157	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.24E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.91E-9	16	61	No hit	No description
PROSITE profile	PS51294	23.938	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-23	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-13	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-13	68	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.54E-10	73	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MGRSPCCSKI GLNRGSWTAS EDKILSDYVK LHGEGKWRQL PIKAGLKRCG KSCRLRWLNY 60 LKPDIKRGNI SCDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLAKKVHDLH 120 HYNQNHDNSG SNSHSNSQEN VKRKEKECVS VNEMKTTESM FPFFYHEENN NIIHPSSFNL 180 DVNEGGSCSL SNVFNMDFTD SFNLSDQMVK ADDMLSGSST ITTSPDVSKE ILDYFSSIPE 240 IGGEWLSSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024959256.1	1e-123	transcription repressor MYB6-like
TrEMBL	A0A2J6MH58	0.0	A0A2J6MH58_LACSA; Uncharacterized protein
STRING	XP_004507986.1	8e-72	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	3e-60	myb domain protein 12