PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015504

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 867aa MW: 96195.2 Da PI: 4.7654

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58696008	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.2e-18	38	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Lsa015504 38 KGQWTPEEDDILCQAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84 799**************************9.**********986 PP
2	Myb_DNA-binding	64	2.9e-20	90	136	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde l+++v+q+G++ W+tIa+ ++ gR +kqc++rw+++l Lsa015504 90 KGPWSKEEDEELLQLVEQYGPKKWSTIAQQLP-GRIGKQCRERWHNHL 136 79****************************.***********97 PP
3	Myb_DNA-binding	48.4	2.1e-15	142	184	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ Lsa015504 142 KEAWTQEEELMLIKAHQSYGNK-WAELTKFLP-GRTDNAIKNHWN 184 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.355	33	84	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-18	36	98	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-15	37	86	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-16	38	84	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-20	40	92	IPR009057	Homeodomain-like
CDD	cd00167	1.74E-13	41	84	No hit	No description
PROSITE profile	PS51294	32.717	85	140	IPR017930	Myb domain
SuperFamily	SSF46689	3.22E-32	87	183	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-19	89	138	IPR001005	SANT/Myb domain
CDD	cd00167	4.13E-17	92	136	No hit	No description
Pfam	PF13921	3.8E-19	93	152	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-28	93	140	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.597	141	191	IPR017930	Myb domain
SMART	SM00717	1.1E-14	141	189	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-21	141	191	IPR009057	Homeodomain-like
CDD	cd00167	1.90E-11	144	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence Send to blast
MESDPINTVS SSDGISQGLQ KIRDIHGRTT GPTRRSTKGQ WTPEEDDILC QAVQRFKGKN 60 WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEE LLQLVEQYGP KKWSTIAQQL 120 PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE LMLIKAHQSY GNKWAELTKF LPGRTDNAIK 180 NHWNSSVKKK LESYLASGLL TQFQGLPCVT HTNHSTPTSS RTQQCSGDNN NSIHKDFEEI 240 SECSQPSTLV RCSSQSHHDM ANEMVVDDDM AADMADTIVL YTTDDPQENL NHGNEEGQPS 300 SNEFQIQSTM LRTESELENP DSVLREDPEL PTSDSVLRQE PELRNPDLIV RVESESDFLQ 360 CIDVDQNNDV GFDMDPHPHE GSSDSLFYQQ PNSGIPDSDA SNPESYYSLL MGTASDQFNA 420 LSVGNQEFTG LIYNSGIPDS TDSHFINDQD NVGAQEEVNG TQIHPSVDDN SGFQENVTQT 480 HPSNDESHVL QTEMNPGFLS YEPPQFPSSD IPFFSCDLIQ SGGELHHEYS PLGIRQLMMT 540 SSMSCFSPCR LWDSPSRDDP PEVVLKNAAK TFMCTPSIMK KRNRELLSPL SEKRCGKKVE 600 CVSILNMAKD KENLNPHDEL SAQKEGNKNT NTTPKVENPS GGGGGVVEQN LDDLLFSPDK 660 FANKLYTTPK GPRAARTTPG RMSSKRNNKG GGGSRFGASS VQLQSCPSSS EPLEVTVDDA 720 VVENSGIFGE TPFRKSLESP SAWKSPWFSF VPGPRVDTDI TVEDMGYFTS PGERSYDALG 780 LMKQLSEHTA SAYANAREVL GDETPDSILK KRFSEKGEKT RQESNLPSER RVLDFSECGS 840 PRKGGGGGGG GGVSLTSPSS YLLKSCR

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence Send to blast

MESDPINTVS SSDGISQGLQ KIRDIHGRTT GPTRRSTKGQ WTPEEDDILC QAVQRFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEE LLQLVEQYGP KKWSTIAQQL  120
PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE LMLIKAHQSY GNKWAELTKF LPGRTDNAIK  180
NHWNSSVKKK LESYLASGLL TQFQGLPCVT HTNHSTPTSS RTQQCSGDNN NSIHKDFEEI  240
SECSQPSTLV RCSSQSHHDM ANEMVVDDDM AADMADTIVL YTTDDPQENL NHGNEEGQPS  300
SNEFQIQSTM LRTESELENP DSVLREDPEL PTSDSVLRQE PELRNPDLIV RVESESDFLQ  360
CIDVDQNNDV GFDMDPHPHE GSSDSLFYQQ PNSGIPDSDA SNPESYYSLL MGTASDQFNA  420
LSVGNQEFTG LIYNSGIPDS TDSHFINDQD NVGAQEEVNG TQIHPSVDDN SGFQENVTQT  480
HPSNDESHVL QTEMNPGFLS YEPPQFPSSD IPFFSCDLIQ SGGELHHEYS PLGIRQLMMT  540
SSMSCFSPCR LWDSPSRDDP PEVVLKNAAK TFMCTPSIMK KRNRELLSPL SEKRCGKKVE  600
CVSILNMAKD KENLNPHDEL SAQKEGNKNT NTTPKVENPS GGGGGVVEQN LDDLLFSPDK  660
FANKLYTTPK GPRAARTTPG RMSSKRNNKG GGGSRFGASS VQLQSCPSSS EPLEVTVDDA  720
VVENSGIFGE TPFRKSLESP SAWKSPWFSF VPGPRVDTDI TVEDMGYFTS PGERSYDALG  780
LMKQLSEHTA SAYANAREVL GDETPDSILK KRFSEKGEKT RQESNLPSER RVLDFSECGS  840
PRKGGGGGGG GGVSLTSPSS YLLKSCR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-66	38	191	6	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-66	38	191	6	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023737840.1	0.0	transcription factor MYB3R-4
TrEMBL	A0A2J6K6M2	0.0	A0A2J6K6M2_LACSA; Uncharacterized protein
STRING	XP_009782666.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-106	Homeodomain-like protein