PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015516

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 353aa MW: 39805.8 Da PI: 6.5247

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-37528	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.9	2.4e-54	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL kkv ++++++ ++i evd++++ePw+Lp +k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ ++ lv Lsa015516 17 LPPGFRFHPTDEELITHYLIKKVVDNSFSA-KAIGEVDMNRIEPWQLPGLAKMGEKEWYFFCVRDKKYPTGLRTNRATDAGYWKATGKDKEIFR-GKLLV 114 79*************************9.89***********8888899***********************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfykgrapkgekt+Wv+he+rle Lsa015516 115 GMKKTLVFYKGRAPKGEKTNWVIHEFRLE 143 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-63	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.243	17	167	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDTYSGFAKE DEQQMDLPPG FRFHPTDEEL ITHYLIKKVV DNSFSAKAIG EVDMNRIEPW 60 QLPGLAKMGE KEWYFFCVRD KKYPTGLRTN RATDAGYWKA TGKDKEIFRG KLLVGMKKTL 120 VFYKGRAPKG EKTNWVIHEF RLEGKSSVQT LPKSAKNEWV ICRVFHKGSG EKKANIPGTM 180 TANSGENEPN PTHFPPLTDT SAPYSGGRVI KSDSLDVPCF SSPINMQTPH NNFLNNLSYP 240 FDPNSNASYA FPAVQSTPTL ESQSNFQFQF QFPTGYTFPG QEQSILKGLL ENNGFKLERE 300 MGTGSQETGL SSEMNTEISS VMSNLEMRKR AFEDQEAPST SVGPIDIDCF WNY

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDTYSGFAKE DEQQMDLPPG FRFHPTDEEL ITHYLIKKVV DNSFSAKAIG EVDMNRIEPW  60
QLPGLAKMGE KEWYFFCVRD KKYPTGLRTN RATDAGYWKA TGKDKEIFRG KLLVGMKKTL  120
VFYKGRAPKG EKTNWVIHEF RLEGKSSVQT LPKSAKNEWV ICRVFHKGSG EKKANIPGTM  180
TANSGENEPN PTHFPPLTDT SAPYSGGRVI KSDSLDVPCF SSPINMQTPH NNFLNNLSYP  240
FDPNSNASYA FPAVQSTPTL ESQSNFQFQF QFPTGYTFPG QEQSILKGLL ENNGFKLERE  300
MGTGSQETGL SSEMNTEISS VMSNLEMRKR AFEDQEAPST SVGPIDIDCF WNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	14	173	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	14	173	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	14	173	17	174	NAC domain-containing protein 19
3swm_B	2e-53	14	173	17	174	NAC domain-containing protein 19
3swm_C	2e-53	14	173	17	174	NAC domain-containing protein 19
3swm_D	2e-53	14	173	17	174	NAC domain-containing protein 19
3swp_A	2e-53	14	173	17	174	NAC domain-containing protein 19
3swp_B	2e-53	14	173	17	174	NAC domain-containing protein 19
3swp_C	2e-53	14	173	17	174	NAC domain-containing protein 19
3swp_D	2e-53	14	173	17	174	NAC domain-containing protein 19
4dul_A	2e-53	14	173	14	171	NAC domain-containing protein 19
4dul_B	2e-53	14	173	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023763278.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-133	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2J6LEW5	0.0	A0A2J6LEW5_LACSA; Uncharacterized protein
STRING	cassava4.1_010528m	1e-152	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-134	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]