PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015576

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 380aa MW: 42841.2 Da PI: 8.7216

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58688990	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-41269	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.7e-06	141	164	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp+Cg+ F + +L++H+ H Lsa015576 141 YPCPNCGEIFQKPGLLEQHQAFkH 164 99******************8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.847	141	169	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	143	164	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.76E-11	167	379	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.8E-6	313	379	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MANLRPAFTK FISLVFILIH LGCFMIFPTS DHHRRRSKKT RNPSSPIPLL RPTATKLKPH 60 KTLSASWSFI KQIFTSKPTS QTDNNSSIIH HVPSPASSTR SLRNSTINAP LETILLDPQQ 120 QRNRPGSLTE SDFFPLRNDI YPCPNCGEIF QKPGLLEQHQ AFKHAVSELF DEDPGKNIVR 180 IIFHTGWPIN GKNPMIYRVM KIHNSPKILT RFEEYREIVK SRAARHGGGR RRDERCIADG 240 NELLRFHCAT FLCDLGQNGN SSICSHQYCS VCGIIRVGFS SKLDGISTLS TSWKGHMALP 300 EDLEEEFRFM HVKRAMLVCR VIAGRIGCDP EMGDKDDPGY DSLVGGEPGG THTCRLDEED 360 ELIVFNPRAV LPCFVIAYTV

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MANLRPAFTK FISLVFILIH LGCFMIFPTS DHHRRRSKKT RNPSSPIPLL RPTATKLKPH  60
KTLSASWSFI KQIFTSKPTS QTDNNSSIIH HVPSPASSTR SLRNSTINAP LETILLDPQQ  120
QRNRPGSLTE SDFFPLRNDI YPCPNCGEIF QKPGLLEQHQ AFKHAVSELF DEDPGKNIVR  180
IIFHTGWPIN GKNPMIYRVM KIHNSPKILT RFEEYREIVK SRAARHGGGR RRDERCIADG  240
NELLRFHCAT FLCDLGQNGN SSICSHQYCS VCGIIRVGFS SKLDGISTLS TSWKGHMALP  300
EDLEEEFRFM HVKRAMLVCR VIAGRIGCDP EMGDKDDPGY DSLVGGEPGG THTCRLDEED  360
ELIVFNPRAV LPCFVIAYTV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023750884.1	0.0	uncharacterized protein LOC111899248
TrEMBL	A0A2J6M6L8	0.0	A0A2J6M6L8_LACSA; Uncharacterized protein
STRING	XP_009630930.1	1e-157	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-100	C2H2 family protein