PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015602
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 226aa    MW: 25898.8 Da    PI: 9.3576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678703PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.4e-11102145151
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                +  +GV++ k + +W A I++      +k+++lg+  + eeAa+++++a+ 
  Lsa015602 102 CVMRGVYY-K-NMKWQAAIKVE-----KKQIHLGTVSSQEEAARLYDRAAF 145
                568***96.5.7*********6.....6********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.6586158IPR001471AP2/ERF domain
PfamPF008475.1E-5102146IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-8104148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-7105149IPR001471AP2/ERF domain
SMARTSM003807.7E-5105160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVSIRRQRLI KLYGRNPFLD FLSSYGNGKS PGCWVQNTRS AGMHLSPSVD IDHHDEKNTK  60
FEEPESSIVN GSSSSYKQPV SHPEFKRRKR HRRKHFENQE ACVMRGVYYK NMKWQAAIKV  120
EKKQIHLGTV SSQEEAARLY DRAAFMCGRE PNFELTVEEK DELSQLSWDD FLAMTRSAIN  180
SKKSQRRVSS RMKFENQRHN NSDSEAEAIE GGNGFSGSDD ADTSVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759213.11e-171ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA0A2J6LNS41e-170A0A2J6LNS4_LACSA; Uncharacterized protein
STRINGGSMUA_Achr6P06510_0017e-61(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.13e-46ERF family protein