PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015609
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 324aa    MW: 36525.5 Da    PI: 7.8059
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-34044PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++ +G+g +W + +++ g++R++k+c++rw++yl
        Lsa015609 14 KGPWSPEEDRKLKDYIETHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding33.51e-1069111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed+ +  +++  G++ W+  a+ ++ gRt++++k++w++
        Lsa015609  69 GEFSDDEDKVICALFASIGSR-WSIMAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.686966IPR017930Myb domain
SuperFamilySSF466891.42E-2511109IPR009057Homeodomain-like
SMARTSM007171.8E-121364IPR001005SANT/Myb domain
PfamPF002491.6E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-241569IPR009057Homeodomain-like
CDDcd001671.72E-91662No hitNo description
PROSITE profilePS5129414.2767117IPR017930Myb domain
SMARTSM007179.6E-1067115IPR001005SANT/Myb domain
PfamPF002494.2E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDRKLKDYIE THGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDKVIC ALFASIGSRW SIMAAQLPGR TDNDIKNYWN TKLKKKMMNS  120
LITLPELRKP LQHLQSFSSS TNYSYPSQSI FQNSNINVNA PLSSSISSSP SYLYSTNTSS  180
YHDQTLSIPS SPRINAANRQ HPVLQSQDHG FLGLVSTETY QQGVKDSSTL VFFGGDQASC  240
SSNSDGSCHY EYRSTAGVYD NHRNNLSDSY KEFGGHYDKE KGYYEDSSLD SSLEEIKQLI  300
STSNIDNNLN FFVDETKVEK SMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767800.10.0transcription factor RAX2-like
TrEMBLA0A2J6L5730.0A0A2J6L573_LACSA; Uncharacterized protein
STRINGXP_009612981.17e-94(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.19e-76myb domain protein 68