PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015661
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 655aa    MW: 73048.1 Da    PI: 9.7157
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58694249PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.2e-07554603147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
        Lsa015661 554 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 603
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.04E-5356427IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.285549608IPR017930Myb domain
SMARTSM007171.2E-7553606IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-10554604IPR009057Homeodomain-like
SuperFamilySSF466891.62E-15555635IPR009057Homeodomain-like
CDDcd116606.83E-17555605No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MVLQKRLEYG FNGYQVPPTP RAARSATRRV PSWKKTEENN TNNNNKQMCA FDLLATVAGK  60
LLQEGGGGGQ EAETVKTEKQ IEDEYPSNVN NNNNICDQGS CNSRSFFVSE IISQAPIMDP  120
QPESYSGPSS GITVSDCSEK IPIPVPVLSV DKVKLPFSCK VDDKNSKPVT NEVPKPHVVH  180
NIDNNNNNNN NNNRGHVHGH GHDHLPLCQD NVNLVVRDDD ENSSGVTRVP NKSFKPPPRI  240
GDRRIRRLLA SKYWKSGPES NDEVHCDVDE EMKGGFRNRK SCYKRPRSLK DYPFKKRRLY  300
EFEYFSNSDD VVNSEDQSSP PRKDSIENGS GFGVKSTGGT KTSGLVSKQN PAFQTRDSHV  360
KLKIKSFRVP ELFFELPKTA TVGYLKRTVM EAMTSILSGE LHVGVMLQGK KIRDDDKTLV  420
QTGIHNKLDA LGFTLEPNHL QAPSSLSPGG DQSFAPNPVT PKPLIRYTPG PNVANQMVIQ  480
PEENPPVTNF GNLIESDHDS APSPPNMSFD NKSGSGSGSD SRALVSVPAM NPRALAVVPM  540
RKSKRSEVAQ RRIRRPFSVS EVEALVQAVE KLGTGRWRDV KLRAFDNAKH RTYVDLKDKW  600
KTLVHTARIS PQQRRGEPVP QELLDRVLAA HAYWSHHQAK QQFKQTPQSE TCRLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-555416414104Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283298KRPRSLKDYPFKKRRL
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758827.10.0telomere repeat-binding protein 5-like
SwissprotQ6R0E31e-134TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2J6LPI10.0A0A2J6LPI1_LACSA; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-126TRF-like 2