PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015699
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 339aa    MW: 36789.4 Da    PI: 10.1217
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684220PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-10617PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31267324359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYe+eHnh+
  Lsa015699 267 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYESEHNHS 324
                99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-17218263IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.1E-33253324IPR003657WRKY domain
PROSITE profilePS5081130.274260326IPR003657WRKY domain
SuperFamilySSF1182901.18E-26262324IPR003657WRKY domain
SMARTSM007743.3E-37265325IPR003657WRKY domain
PfamPF031061.6E-26267323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAVELMNSIR INSFNGKMEE IAVREAGAAG LKSLENLIGL LSSQSHHEPS YSAGTSDASS  60
TTDYVAVADV AVTRFKKFIS LLDRTSTGHA RFRRGPVSNP PVVLEKKSAF TPTAGNSSQQ  120
YNQTVVAAAE KVNSSTAPIQ QRFPQIHLAK SGSFDRKDVP TNTINFAAAA ASPANSFMSS  180
LTGDTDGLQP SMSSGFQITN LSQVSSAGQP NMSTSSFKRK CNSVDDSHTK CTNSSGRCHC  240
SKKRKSRMKR VVRVPAISMK MADIPPDDYS WRKYGQKPIK GSPHPRGYYK CSSLRGCPAR  300
KHVERALDDP TMLIVTYESE HNHSLNVKDS SATIIFESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20253325273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728458.10.0probable WRKY transcription factor 7
SwissprotQ9STX02e-88WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2J6KSE20.0A0A2J6KSE2_LACSA; Uncharacterized protein
STRINGXP_009604893.11e-138(Nicotiana tomentosiformis)