PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015700
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 259aa    MW: 29522.1 Da    PI: 9.5168
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32125581PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-133396148
                     TSSS-HHHHHHHHHHHHHTTTT.................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.................tWktIartmgkgRtlkqcksrwqkyl 48
                     rg++ + E+ l ++++ ++G+                   W++Iar+++ gRt++++k++w++++
        Lsa015700 33 RGKMAPHEERLVLELHSKFGNSlsvavglcslqrfsxlaVWSKIARKLP-GRTDNEIKNYWRTHM 96
                     788899***************9***************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.437127IPR017877Myb-like domain
SuperFamilySSF466893.07E-1613101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-81341IPR009057Homeodomain-like
PROSITE profilePS5129417.20228100IPR017930Myb domain
SMARTSM007178.2E-103298IPR001005SANT/Myb domain
PfamPF002491.4E-103395IPR001005SANT/Myb domain
CDDcd001671.57E-73896No hitNo description
Gene3DG3DSA:1.10.10.605.1E-174297IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
TMRLHSKWFQ GLKRTGKSCR LRWVNYLHPG LKRGKMAPHE ERLVLELHSK FGNSLSVAVG  60
LCSLQRFSXL AVWSKIARKL PGRTDNEIKN YWRTHMRKKA QEKKRTSLSR SPSPSFSHSS  120
SSSSICTSNP TIDSMPMIET KERSFYDTGG VEMFSVMKGK NKNNNNSFKK AATRVSDSSE  180
GHEGYCSMDD IWKDIDLDLL EDDHSIKPVF DPYSEIAVPS LTWEYNYCSS TSWTFNGQEE  240
FGKDMISLTS QQFSAGLTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-131410037105MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-131410091159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-131410091159MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-131410060128MYB TRANSFORMING PROTEIN
1mse_C3e-131410037105C-Myb DNA-Binding Domain
1msf_C3e-131410037105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023761053.11e-127transcription factor MYB48-like
SwissprotQ9LX821e-46MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2J6LJX41e-105A0A2J6LJX4_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.33e-43myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]