PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015771
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NF-YB
Protein Properties Length: 193aa    MW: 21720.2 Da    PI: 8.2737
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58677458PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-53932PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB163.33.4e-5139134297
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                reqd +lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easd+c++ekrkt+ngdd+ wa+ +lGf+dy+eplk yl+k rel+ge+
  Lsa015771  39 REQDLLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDHCRKEKRKTVNGDDVSWAMMNLGFDDYAEPLKRYLHKIRELDGER 134
                89*******************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5334163IPR009072Histone-fold
SuperFamilySSF471137.85E-4141163IPR009072Histone-fold
PfamPF008081.7E-2745108IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.7E-177290No hitNo description
PRINTSPR006158.7E-1791109No hitNo description
PRINTSPR006158.7E-17110128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVHNNIGGNP AGREVLNFTY HDASTSTAAS QEHHGHVIRE QDLLLPIANV GRIMKQILPP  60
NAKISKEAKE TMQECVSEFI SFVTGEASDH CRKEKRKTVN GDDVSWAMMN LGFDDYAEPL  120
KRYLHKIREL DGERANQKGA SSSSNEEKDH LRHAHQETSS NYRSTGNQVP QKATVSSSPN  180
LFKFSVIDKR NRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4238129192Transcription factor HapC (Eurofung)
4g92_B5e-4238129192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762392.11e-145nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2J6LGZ21e-144A0A2J6LGZ2_LACSA; Uncharacterized protein
STRINGEMJ028769e-67(Prunus persica)
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]