PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa015835

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 410aa MW: 46651.6 Da PI: 6.3666

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-36128	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	160	183	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H Lsa015835 160 YLCGVCGRKCKTNLDLKKHFKQlH 183 56*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	2.1E-6	80	150	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.616	160	188	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	162	183	IPR007087	Zinc finger, C2H2
CDD	cd06167	9.43E-11	179	314	No hit	No description
Gene3D	G3DSA:3.40.50.1010	2.1E-6	245	311	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MNLLCKSIET LTLSLNSPPP PLSPRSHQLP LYSFKFTTTT TFRQCRRSIT PSSASDHPAS 60 PASMSEIDMV QTKEGVFAAK PKKVVILWDL DNKPPRGPPY DAAMALKNIA NHFGELVDVS 120 AYANRHAFIH LPHWVVEQRR DQRRLDILER KGVATPSEPY LCGVCGRKCK TNLDLKKHFK 180 QLHMREREKK MNRMKSLKGK KRQRFKERFI TGNHKYTEAA RTLVTPKTGY GLAAELRRAG 240 VFVKTVEDKP QAADWALKRQ MQHSMSRGID WLVLVSDDSD FSEMLRRAKA SNLGTVVVGD 300 WDRALGRQAD LWVPWNRVEN GEITEEDLVL RTRSDEFLDD VDNGVFVSSF DGDMDENIGP 360 LDGILDELVA KRSGFNQSKI SAFSEGEDED EDEEDDYLSD SDDEAEDWYT

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MNLLCKSIET LTLSLNSPPP PLSPRSHQLP LYSFKFTTTT TFRQCRRSIT PSSASDHPAS  60
PASMSEIDMV QTKEGVFAAK PKKVVILWDL DNKPPRGPPY DAAMALKNIA NHFGELVDVS  120
AYANRHAFIH LPHWVVEQRR DQRRLDILER KGVATPSEPY LCGVCGRKCK TNLDLKKHFK  180
QLHMREREKK MNRMKSLKGK KRQRFKERFI TGNHKYTEAA RTLVTPKTGY GLAAELRRAG  240
VFVKTVEDKP QAADWALKRQ MQHSMSRGID WLVLVSDDSD FSEMLRRAKA SNLGTVVVGD  300
WDRALGRQAD LWVPWNRVEN GEITEEDLVL RTRSDEFLDD VDNGVFVSSF DGDMDENIGP  360
LDGILDELVA KRSGFNQSKI SAFSEGEDED EDEEDDYLSD SDDEAEDWYT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023744630.1	0.0	uncharacterized protein LOC111892816
TrEMBL	A0A2J6JRW9	0.0	A0A2J6JRW9_LACSA; Uncharacterized protein
STRING	POPTR_0014s02520.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-157	C2H2-like zinc finger protein