PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015838
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92247.5 Da    PI: 6.2989
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-31712PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181775357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Lsa015838 17 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
               5679*****************************************************97 PP
2START168.73.8e-531583662205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++   v+e+l+d++ W ++++++++++v+ +   g+++l +++l+
  Lsa015838 158 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVSLEPS-RVAEILKDRPSWYRDCRAVDVVNVLPTSngGTIELLYMQLY 256
                789*******************************************************.8888888888**************976666*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+  Rdf+ +Ry+   ++g++vi+++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++l+++ ++++lr+l++s ++ ++kt
  Lsa015838 257 APTTLATaRDFWLLRYTSATEDGSLVICERSLTNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWRVPEVLRPLYESPTVLAQKT 356
                **************************************9988899******************************************************* PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                ++ +l+++++
  Lsa015838 357 TMMALRQLRQ 366
                *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.2E-151480IPR001356Homeobox domain
SuperFamilySSF466896.42E-171679IPR009057Homeodomain-like
CDDcd000861.39E-161774No hitNo description
PfamPF000462.9E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181975IPR009057Homeodomain-like
PROSITE profilePS5007115.2732076IPR001356Homeobox domain
CDDcd146866.47E-669108No hitNo description
PROSITE profilePS5084825.559148348IPR002913START domain
CDDcd088756.09E-75152368No hitNo description
SMARTSM002345.9E-38157367IPR002913START domain
Gene3DG3DSA:3.30.530.202.3E-24157362IPR023393START-like domain
SuperFamilySSF559611.11E-36157366No hitNo description
PfamPF018521.2E-50158366IPR002913START domain
PfamPF086702.8E-51694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MAMSCKDGKG GILDNGKYVR YTPEQVEALE RLYHECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRREAS RLQGVNRKLS AMNKLLMEEN DRLQKQVSHL VYENGFFRQH  120
TPQNTTLPSK DTSCESVVTS HLTQNPPQDA SPAGLLSIAE ETLTEFLSKA TGTAVEWVQM  180
PGMKPGPDSI GIVAISHGCT GVAARACGLV SLEPSRVAEI LKDRPSWYRD CRAVDVVNVL  240
PTSNGGTIEL LYMQLYAPTT LATARDFWLL RYTSATEDGS LVICERSLTN TQNGPSMPPV  300
QNFVRAEMLP SGYLIRPCEG GGSIIHIVDH MNLEAWRVPE VLRPLYESPT VLAQKTTMMA  360
LRQLRQIALE ASSSGSPNWG RRPAALRGLS QRLSRGFNEA LNGFPDEGWS LMGNDGNEDV  420
TILVNTSPEK LMGLNLSFGN GFTPVSNAVM CAKASMLLQN VPPALLLRFL REHRSEWADN  480
NIDAYSAAAI KLGPCSVPGG RIGNYGGQVI LPLAHTIEHE ELLEVIKLEG VDHSPEDALM  540
PRDMFLLQLC NGMDENAVGM CAELIFAPID SSFADDAPLL PSGFRIIPLD STKETSGTPN  600
RTLDLASALE IGGSGNKLSN DQNTNNGTSR SVMTIAFEFA FESHMQESVA TMSRQYVRSI  660
ISSVQRVALA LSPSSHLNPN GTLQSPMGTP EAHTLARWIS HSYRCYLGVE LLKTGSHGNE  720
TVLKSLWHQS DAIMCCSLKA MPVFTFANQA GLDMLETTLV ALQEISLEKI LDEHGRKSLC  780
SEFPQIMQQG FACLQGGICL SSMGRPVSYE RAVAWKVLNE EENAHCICFM FINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759500.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2J6LN620.0A0A2J6LN62_LACSA; Uncharacterized protein
STRINGXP_002515977.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]