PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015840
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 222aa    MW: 24886.8 Da    PI: 4.9984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682532PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-48824PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13158203655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Lsa015840 158 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 203
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17155215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-13156207No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17157215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10158203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQPTGSGGGG GLSRFRSAPA TWLEALLESE EEDVIIDPPK PPPHQQASIA GTPTPSRPTY  60
VDPNIFLPSR QNSSPAEFFS EINNPDAYLS NYDDYLSSSY HNVKPSRAVD VDDQQPKFTT  120
QLSGDQSALL DVEMDKLLGD SVPCRVRAKR GCATHPRSIA ERVRRTRISD RIRKLQELVP  180
NMDKQTNTAD MLEEAVEYVK FLQRQIQELK EHRDKCTCVV DD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753940.11e-165transcription factor bHLH81-like isoform X1
SwissprotQ9C8P82e-60BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2J6M0671e-164A0A2J6M067_LACSA; Uncharacterized protein
STRINGSolyc06g065040.2.14e-77(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.14e-45bHLH family protein