PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015859
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TALE
Protein Properties Length: 481aa    MW: 55268.4 Da    PI: 6.0917
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-15274PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-093553921954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   n+yp+ +e+  LAk++gLt +q+ +WF N R +
  Lsa015859 355 FEHflNPYPKDSEKIMLAKQTGLTRSQIANWFINARVR 392
                665559******************************88 PP
2BELL894.9e-29221292172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e+q+lq+k ++L s l+eVd++Y+ y++qlq+v ++ ++v g+g+a+ Yt+lA ++iS hFrcL+dai +qi
  Lsa015859 221 EKQDLQNKVTRLFSFLDEVDRKYREYCQQLQIVEAALDVVSGCGAARTYTTLAHRTISCHFRCLRDAINGQI 292
                6899******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-35150290IPR006563POX domain
PfamPF075263.7E-38157288IPR006563POX domain
PROSITE profilePS5007112.357333396IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-27335406IPR009057Homeodomain-like
CDDcd000869.06E-12336397No hitNo description
SMARTSM003894.9E-9336400IPR001356Homeobox domain
SuperFamilySSF466892.31E-17337402IPR009057Homeodomain-like
PfamPF059204.6E-18353392IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MATYYPPSNN HQRDVFQSSY DSYQESPCPP VDMMYQNQTS TDNSFLQLLS GNMQPNPQIL  60
SQVKDHNTSD DERNLQYQEL SLSLGMQIPS SSMDLPSFQY NYLNTHLQDP HDHGSHGSQT  120
HKVENVDYLS FDLVGKNGQC SVSDTYDVSY GLVSGRILDS KYLKPSQELL EEVANLREAL  180
RQLKINKLSN LHTLRVDDKK NSKFTPHEST TTSSGELSAS EKQDLQNKVT RLFSFLDEVD  240
RKYREYCQQL QIVEAALDVV SGCGAARTYT TLAHRTISCH FRCLRDAING QIQVTRQRLG  300
EQDDSVDRVL PRLRNVEKQL RQQRTLQQLG VTRHSWRPQR GLPEGSVSIL RAWLFEHFLN  360
PYPKDSEKIM LAKQTGLTRS QIANWFINAR VRLWKPMIED IYKEEFGNCT SSQEHALKGA  420
NNNSSSSEDK EKELELGQDL SQNPDFFSEI EVNRSPTHRH TDMSDQYRFG EEPQLLSDFL  480
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-14342399158Homeobox protein Meis1
4xrs_B1e-14342399158Homeobox protein Meis1
5bng_A1e-14342399158Homeobox protein Meis2
5bng_B1e-14342399158Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733770.10.0BEL1-like homeodomain protein 3
RefseqXP_023733771.10.0BEL1-like homeodomain protein 3
SwissprotQ9SIW12e-96BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A2J6KFL50.0A0A2J6KFL5_LACSA; Uncharacterized protein
STRINGXP_008388024.11e-122(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.15e-91BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]