PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015893
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 314aa    MW: 35028.8 Da    PI: 6.7296
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-19494PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.12.4e-25119179259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK++ +s+ pr YYrCt++   gC+++k+v++ +++ ++ +itY g+H+++
  Lsa015893 119 EDGYAWRKYGQKMILNSQSPRCYYRCTHKpdhGCKAQKQVQKLEDESNMYHITYFGHHTCP 179
                8***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-25110180IPR003657WRKY domain
SuperFamilySSF1182901.06E-24113180IPR003657WRKY domain
PROSITE profilePS5081119.703113181IPR003657WRKY domain
SMARTSM007742.3E-36118180IPR003657WRKY domain
PfamPF031066.5E-24119179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEKNKKRLNE TLIKGEDSAK KLQALLCRRA YNDGSVSVED LVMEILGSFS RGLSMLRSCD  60
SGEFAGAPAS PDMTLATSGD QTPEVKNRKK PAPALKERRG CYKRRRTIDS RVITSVTIED  120
GYAWRKYGQK MILNSQSPRC YYRCTHKPDH GCKAQKQVQK LEDESNMYHI TYFGHHTCPT  180
LNNFSHSGVV LDFNGGASKN PHSLSNSPSA ITNFQVQPSI KQEVESKTQS TDVSVSDNVS  240
SANDGYSHNS SPALEWNEIW QHNQLGSSGH EGPPFMWFDN EDSCASTSSH GYLDMDFLNN  300
DGFSSDFLFD EVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19118178868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187105RKKPAPALKERRGCYKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023735861.10.0probable WRKY transcription factor 54
TrEMBLA0A2J6MCB60.0A0A2J6MCB6_LACSA; Uncharacterized protein