PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015920
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 280aa    MW: 30393 Da    PI: 10.2304
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681178PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.38.7e-25204262259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D y+W+KYG K++ gs++pr YY+C +  gCp++k+ve + +d k++ +tY geH+h+
  Lsa015920 204 ADDYSWKKYGEKKIDGSNYPRVYYKCNTGkGCPARKRVELALDDSKMLLVTYDGEHRHH 262
                69************************8776****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-25195262IPR003657WRKY domain
PROSITE profilePS5081124.684198264IPR003657WRKY domain
SuperFamilySSF1182901.83E-22201263IPR003657WRKY domain
SMARTSM007741.9E-25203263IPR003657WRKY domain
PfamPF031061.6E-22205262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAVDCVGVQT VDNLNRMFHL TSHDFNVSSN YKQSVSGLKR TGHARFRRGP SSSSSTDSQG  60
TSTSSQSEEK QQDAPLTASK ACFLNKSVSD SEAEAVTSSR STSSSSLVSS LAGGGLEEES  120
VSNGKRFSSL GIVAPSLTFS SRKPPLPSTH RKRCSADNPA ASLHRSGREN RSSGCYCCKR  180
RKIGSKREIR RVPIIGSKVT SIPADDYSWK KYGEKKIDGS NYPRVYYKCN TGKGCPARKR  240
VELALDDSKM LLVTYDGEHR HHHAPTPVPT SLTGLVVQSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-15191265275WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765493.10.0probable WRKY transcription factor 11
TrEMBLA0A2J6LAA10.0A0A2J6LAA1_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-40WRKY DNA-binding protein 11