PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa015937
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 478aa    MW: 51956.7 Da    PI: 8.9989
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690978PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-3202PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.2e-0686108123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C++C+k F r  nL+ H r H
  Lsa015937  86 YVCEICNKGFQRDQNLQLHRRGH 108
                9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-685108No hitNo description
SMARTSM003550.009886108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.13686108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-586108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SMARTSM0035595127157IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.42E-6157182No hitNo description
SMARTSM00355190162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MSNISGDGGG SFSSGNTGGV LEEGQQRQTS IVNSHSTSTA ADVGSTPQEL LPDSSKKKKR  60
SLPGTPDPSA QVIALSPTSL MAKNKYVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSST  120
EIIKRVYICP EPTCVHHNPT RALGDLTGIK KHFSRKHGEK KWKCEKCSKR YAVQCDWKAH  180
SKICGTKEYK CDCGTIFSRR DSFITHRAFC DALAEENNKL SQTMQQDHHS TPDDQLNQHI  240
NHTISITSPE FSHGGMPDSK TPSELLPLNI MQGGRGSLFG SSPRNGSPSS LQLGGSTLSS  300
PLTSATALLQ KAAQMGATSS NGSNNNNNNN NGSMNNLVTT MAPPSFGGGG AYNGTETLID  360
QYHPHQSHLA GIIGGGFSSQ FQETSMSRFF NPSINNGGGH SNDVGLYSGY MNPRKELIMN  420
NNNNNVGHNA NPGLNDSNNP FLRFKRDGNG ENLTVDFLGV GGMRLRSFNE QHHQGMEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-33158221366Zinc finger protein JACKDAW
5b3h_F7e-33158221366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023752077.10.0protein indeterminate-domain 2-like isoform X1
SwissprotQ9SCQ61e-110IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2U1MUA20.0A0A2U1MUA2_ARTAN; Zinc finger, C2H2-like protein
STRINGXP_010259675.11e-142(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-107C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]