PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016140
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 237aa    MW: 26513.7 Da    PI: 10.171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58675273PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-37565PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.4e-13168207245
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 
                ++kGVr  + +grW A Irdp++   + +++lg+f+t+eeA +a
  Lsa016140 168 QCKGVRKTE-SGRWSAKIRDPVK---KSQVWLGTFDTKEEASEA 207
                69****888.7*********654...5**********8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.64281143IPR001471AP2/ERF domain
SMARTSM003800.003592149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-893140IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-695141IPR016177DNA-binding domain
PROSITE profilePS5103215.738168225IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-11168220IPR016177DNA-binding domain
SMARTSM003803.0E-6168231IPR001471AP2/ERF domain
PRINTSPR003677.6E-5169180IPR001471AP2/ERF domain
CDDcd000183.23E-13170207No hitNo description
PfamPF008473.2E-5170207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-15170220IPR001471AP2/ERF domain
PRINTSPR003677.6E-5191207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MADQPGVTKM ENSAEDDNKQ QMEATVTYPR KVRVIVSDPH ATDSSSDEGG NGERPSRRRI  60
VHEIVLGLRA GENKDDGEAS KRRGSMDEKE NERIRGKLCS EIRDPFNKKR VWFGTFDTAE  120
KSLKPYKIKK EKFRAGQAAE NQQVTPVSKG VPEGKKVAKL DDDPTRKQCK GVRKTESGRW  180
SAKIRDPVKK SQVWLGTFDT KEEASEAIES KKVEFGSKRT LSNAESGSSL KTPKTET
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762511.11e-173ethylene-responsive transcription factor CRF6-like
TrEMBLA0A2J6LGP41e-172A0A2J6LGP4_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-13ERF family protein