PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016155

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 228aa MW: 25682.8 Da PI: 9.5377

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58681326	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	49	95	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr+llP++ K +Ka+ L ++v+ +k+L Lsa016155 49 NRHSEAERRRRKRINGHLATLRSLLPSN-----VKTDKASLLAEVVRRVKEL 95 67***********************9.....7**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.053	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-10	49	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-13	50	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.88E-10	50	98	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-11	50	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-11	52	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MMQYLPTHGY ELSNCSSIIR NLVYDHGGGE LSAVTEAQSA EEKATAACNR HSEAERRRRK 60 RINGHLATLR SLLPSNVKTD KASLLAEVVR RVKELKKMAA ELEPKGTDQS DDTTRNMIPS 120 ENDELQLTYI GEDSSTRKMM IKVMMCCEDR GELIVELTRA LGLVRGKVMR MEIATLGGRI 180 KCVLWVQVFG ATREQGLHEL RRALKVVMDR GAFLDMPRNK RPRIPGCI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735519.1	1e-168	transcription factor bHLH30-like
TrEMBL	A0A2J6KBR0	1e-167	A0A2J6KBR0_LACSA; Uncharacterized protein
STRING	XP_009605433.1	1e-63	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	8e-34	bHLH family protein