PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016189

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 289aa MW: 31424.4 Da PI: 7.9553

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58677840	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H Lsa016189 139 YECKTCNRSFTSFQALGGHRASH 161 99**********99999998887 PP
2	zf-C2H2	12.8	0.00036	201	223	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Lsa016189 201 HECSICGSDFTSGQALGGHMRRH 223 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.1E-12	138	163	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.37E-8	138	161	No hit	No description
SMART	SM00355	0.071	139	161	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.471	139	166	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	141	161	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.0E-4	196	223	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.37E-8	196	223	No hit	No description
Pfam	PF13912	8.7E-11	200	225	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	201	223	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.764	201	228	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	203	223	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
HDHDIINYMA YSTTPIPSVK EGSHMEAHQD DDIMIMEDMK SHIKGKRTKR RRPASSALTL 60 SIACTTSSSS TTTTSTTTGA PANPTFFHMP TTTSIDFTNI LHDNDEDVAN CLILLAHGHN 120 LPAAPSPVNA VVSPPLYVYE CKTCNRSFTS FQALGGHRAS HNKPHKDVHC QPSKNRTSLS 180 ISPNKNVICS PSGLIKGPKV HECSICGSDF TSGQALGGHM RRHRSMSMAT TTCSTSNGCH 240 ESKKHKTLLS LDLNLPAPVE DDHKETKFGF SSNNQIIVFS APSLVDCHF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023746059.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A2J6JP99	0.0	A0A2J6JP99_LACSA; Uncharacterized protein
STRING	XP_006493540.1	2e-63	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-43	C2H2 family protein