PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016260

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

BES1

Protein Properties

Length: 670aa MW: 75847.3 Da PI: 6.4297

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58692609	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	147.6	1e-45	67	193	3	132
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.sslkss 101 +gr++++kE+E++k+RER+RRai+++++aGLR++Gn +lp+raD+n+Vl+AL+reAGw+ve+DGtt+r+++ g +s+es+++ sslks+ Lsa016260 67 GGRNEREKEKERTKLRERHRRAITSRMLAGLRQYGNSPLPARADMNDVLAALAREAGWTVEADGTTFRQSTPSS----KLGVYPGRSVESPVSsSSLKSY 162 69****************************************************************887666....5555555555555555679* PP DUF822 102 alaspvesysaspksssfpspssldsislas 132 ++++ ++ s++++ +++psp+slds+ + Lsa016260 163 SVKTSLDFPSSVLRIDESPSPASLDSVVVPG 193 *************************998754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.6E-44	67	203	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	3.97E-144	231	664	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	5.2E-162	234	666	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	1.8E-82	249	622	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.6E-48	271	285	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.6E-48	292	310	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.6E-48	405	427	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.6E-48	478	497	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.6E-48	512	528	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.6E-48	529	540	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.6E-48	547	570	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.6E-48	583	605	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
XVNLVKCPTP LFRRRGENAV EMNSDNHDGS PHNHHSQPHQ QRRPRGFAAA AMGISTITTT 60 INTSPRGGRN EREKEKERTK LRERHRRAIT SRMLAGLRQY GNSPLPARAD MNDVLAALAR 120 EAGWTVEADG TTFRQSTPSS KLGVYPGRSV ESPVSSSSLK SYSVKTSLDF PSSVLRIDES 180 PSPASLDSVV VPGIGTTECE KYSTSPINSH DCLETDQLIQ EGQIVDQGLN FLGTAYVPVY 240 VMLGTGLINK FCQLIDREAV RKELRLLKSL HVDGVFVECW WGIIEAQGPQ KYCWSGYREL 300 FNIIHEFELK LQVGLAFHEY GGNDSISIPL PQWVVEIGKE NKDIFFTDRE GRRNTECLSW 360 GIDKERVLKG RTAAEVYFDV MRSFRTEFDD MFVEGLITGV EIGLGANGEL KYPSFSEKMG 420 WRYPGIGEFQ CYDKYMQQNL VKSSSLRGQT FWGRGPENCG DYNSSPQETG FFCEHGDYGS 480 HYGRFFLQWY SQFLIDHANT ILSLATLAFE EIQILVKIPA VYWWYRSKSH AAELTAGYYN 540 PDNHDGYSRL FKVLKKHSVA VKFVCPGSNL NLSSKENHDP EGLTWQVLNS AWEEGLCVAG 600 ENVFPCFDRE VLMRLLETAK PSNDPDRHHF VFFNYKPPFP ILPLLDTTLC FSELDQFVRC 660 MHGENVGTEM

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

XVNLVKCPTP LFRRRGENAV EMNSDNHDGS PHNHHSQPHQ QRRPRGFAAA AMGISTITTT  60
INTSPRGGRN EREKEKERTK LRERHRRAIT SRMLAGLRQY GNSPLPARAD MNDVLAALAR  120
EAGWTVEADG TTFRQSTPSS KLGVYPGRSV ESPVSSSSLK SYSVKTSLDF PSSVLRIDES  180
PSPASLDSVV VPGIGTTECE KYSTSPINSH DCLETDQLIQ EGQIVDQGLN FLGTAYVPVY  240
VMLGTGLINK FCQLIDREAV RKELRLLKSL HVDGVFVECW WGIIEAQGPQ KYCWSGYREL  300
FNIIHEFELK LQVGLAFHEY GGNDSISIPL PQWVVEIGKE NKDIFFTDRE GRRNTECLSW  360
GIDKERVLKG RTAAEVYFDV MRSFRTEFDD MFVEGLITGV EIGLGANGEL KYPSFSEKMG  420
WRYPGIGEFQ CYDKYMQQNL VKSSSLRGQT FWGRGPENCG DYNSSPQETG FFCEHGDYGS  480
HYGRFFLQWY SQFLIDHANT ILSLATLAFE EIQILVKIPA VYWWYRSKSH AAELTAGYYN  540
PDNHDGYSRL FKVLKKHSVA VKFVCPGSNL NLSSKENHDP EGLTWQVLNS AWEEGLCVAG  600
ENVFPCFDRE VLMRLLETAK PSNDPDRHHF VFFNYKPPFP ILPLLDTTLC FSELDQFVRC  660
MHGENVGTEM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-116	236	664	11	444	Beta-amylase
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023750187.1	0.0	beta-amylase 8 isoform X1
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2J6M8D2	0.0	A0A2J6M8D2_LACSA; Beta-amylase
STRING	XP_004512346.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]