PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016279
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 277aa    MW: 31647.5 Da    PI: 7.8207
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-14987PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.6e-112371147
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     + +WT+eE +++ da +++ ++   +W  +ar ++ g++  ++ + ++k+
        Lsa016279 23 KTKWTPEENKRFEDALALFDKEtpdRWQNVARLIP-GKSVSDVMHQYRKL 71
                     579*****************99*************.************97 PP
2Myb_DNA-binding45.61.6e-14128172347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
        Lsa016279 128 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 172
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.0162176IPR017884SANT domain
SMARTSM007171.7E-102274IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-52371IPR009057Homeodomain-like
PfamPF002498.1E-92371IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-112377IPR009057Homeodomain-like
CDDcd001674.21E-82571No hitNo description
PROSITE profilePS5129419.746120177IPR017930Myb domain
SuperFamilySSF466891.66E-17123176IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17124176IPR006447Myb domain, plants
SMARTSM007173.2E-12125175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-12126172IPR009057Homeodomain-like
PfamPF002496.4E-12128172IPR001005SANT/Myb domain
CDDcd001675.64E-11128173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDEIVSRSSY FMGSTMFFED TEKTKWTPEE NKRFEDALAL FDKETPDRWQ NVARLIPGKS  60
VSDVMHQYRK LEEDISEIEA GLLVVPGYSC SDANAMTLEW VVDNHPQFYS HGGKRSRLPD  120
QEKKKGIPWT EEEHRQFLLG LKKYGKGDWR NISRNFVTTR TPTQVASHAQ KYFIRQLSGG  180
KDKRRSSIHD ITTVHPNDPT KLPESDTCPK PGECTTMVTP PPKPHLHHHP TTNHHMEKAL  240
YQWSHPNGGG IMMAPLHGSS SYGPQYGHLG TVFQGNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1626991184RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736932.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H73e-83DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2J6K8K80.0A0A2J6K8K8_LACSA; Uncharacterized protein
STRINGXP_002534707.11e-103(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-88MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]