PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016292
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CO-like
Protein Properties Length: 383aa    MW: 42977.8 Da    PI: 6.0537
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689620PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-840PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72e-071961440
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  Lsa016292 19 RPCDFCNKSTALLYCRADNAKLCLSCDREVHSTnqlftkHTRS 61
               78******99*********************668888888875 PP
2zf-B_box24.55.5e-0862111441
   zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg............Htvvp 41 
                  C+ +++ ++++fC ++ +  C++C  e+H+             H+++p
  Lsa016292  62 LLCDGCDSSPASIFCSTDAVVHCQNCDWETHNKsnsnsnssspatHDRRP 111
                57*****************************7667777777777777665 PP
3CCT583.3e-20336378143
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                Re al+RYkeK+k+R+++K+irYesRK++AesR R++GrF+k 
  Lsa016292 336 RETALSRYKEKKKSRRYDKHIRYESRKVRAESRIRIRGRFAKM 378
                99***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.311663IPR000315B-box-type zinc finger
SMARTSM003363.5E-131663IPR000315B-box-type zinc finger
PfamPF006431.3E-51961IPR000315B-box-type zinc finger
CDDcd000211.13E-71963No hitNo description
PROSITE profilePS501199.71259112IPR000315B-box-type zinc finger
PfamPF006431.7E-562111IPR000315B-box-type zinc finger
CDDcd000211.77E-46392No hitNo description
SMARTSM003361.364112IPR000315B-box-type zinc finger
PfamPF062034.1E-15336378IPR010402CCT domain
PROSITE profilePS5101714.654336378IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MPDSPLPAEH SHGSPLRRRP CDFCNKSTAL LYCRADNAKL CLSCDREVHS TNQLFTKHTR  60
SLLCDGCDSS PASIFCSTDA VVHCQNCDWE THNKSNSNSN SSSPATHDRR PLEGFTGCPS  120
VTDLLSILGF EDLSKKGLLL CGSCEEGSDS YGSGDKFPDY LVWDTPSFVS LDDLIVSSGS  180
EHNYQAMGVP PLPKNRNAAF GAYKDELVRQ LRELAKSDPN VDGDEGIIKP INDEFQPIIN  240
MATTQNNRSS GFEHNKLEEQ QVAYSSNEAN TFQWCPDVCD AVGQDLYSDQ LHNATETQCI  300
VPVEKIDTVH HSITAENTQV FPNIFVGVRE INSQERETAL SRYKEKKKSR RYDKHIRYES  360
RKVRAESRIR IRGRFAKMDR LDV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023738456.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A2J6K5900.0A0A2J6K590_LACSA; Uncharacterized protein
STRINGVIT_07s0104g01360.t011e-127(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-83B-box type zinc finger protein with CCT domain