PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016297
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 340aa    MW: 38477.1 Da    PI: 6.022
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-13332PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.32.4e-2696152360
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                Dg+nWrKYGqK v+++ f rsYY+Ct+a+Cp++k+ve+s+ d+++ ei Y  +H+h+k
  Lsa016297  96 DGFNWRKYGQKLVRDNAFVRSYYKCTYAKCPARKQVEHSH-DGHIKEINYLCKHQHPK 152
                9**************************************9.***************85 PP
2WRKY1048.1e-33217275159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dgy+WrKYGqK+vk+s++prsYYrC+ agCpvkk+ver+++d+kvv++tYeg+H+h+
  Lsa016297 217 VNDGYRWRKYGQKMVKNSPYPRSYYRCSNAGCPVKKHVERASHDEKVVITTYEGRHDHD 275
                58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-2384153IPR003657WRKY domain
PROSITE profilePS5081119.76189153IPR003657WRKY domain
SuperFamilySSF1182906.15E-2192153IPR003657WRKY domain
SMARTSM007746.7E-2594152IPR003657WRKY domain
PfamPF031061.3E-1996151IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-35203277IPR003657WRKY domain
SuperFamilySSF1182907.59E-29212277IPR003657WRKY domain
PROSITE profilePS5081134.452212277IPR003657WRKY domain
SMARTSM007741.7E-38217276IPR003657WRKY domain
PfamPF031065.6E-26218274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MLKSSGYLKL TGGSYGKNQA SLSDQERNFQ SVMTKDSDDI HLGSGTHTLH SNQEGSSSPI  60
SVNQEKTIAT SEQNPSPKEG NFVVNVSKSP EKPTVDGFNW RKYGQKLVRD NAFVRSYYKC  120
TYAKCPARKQ VEHSHDGHIK EINYLCKHQH PKPNHSSETL NENFVEFEML QTNETEIGVD  180
NNAPQLKRQK KESDNVVTKT NYEPRVVVET KSVVDIVNDG YRWRKYGQKM VKNSPYPRSY  240
YRCSNAGCPV KKHVERASHD EKVVITTYEG RHDHDMPSGI RNVTQNVKEN NNGTMDDDGN  300
DHDDDDDDDD DNDGDGDGDD PQPQPKTNES KGMEMFVIVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-39205279276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023747425.10.0probable WRKY transcription factor 33
SwissprotQ6B6R47e-57WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2J6JL090.0A0A2J6JL09_LACSA; Uncharacterized protein
STRINGXP_009605529.16e-70(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-64zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]