PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016310

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TALE

Protein Properties

Length: 587aa MW: 63920.9 Da PI: 7.6222

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S18787285	PU_unref	Unigene	View CDS
gnl\|UG\|Lsa#S58690015	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-783	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.5	1.3e-09	405	442	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Lsa016310 405 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 442 554459******************************88 PP
2	BELL	119.1	2.1e-38	264	335	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+q+vis Fe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi Lsa016310 264 ERQEIQMKKAKLVNMLDEVEQRYRQYHHQMQIVISWFEQAAGIGSARTYTALALQTISKQFRCLKDAIMGQI 335 79********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.3E-62	186	333	IPR006563	POX domain
Pfam	PF07526	4.8E-47	191	332	IPR006563	POX domain
PROSITE profile	PS50071	12.195	383	446	IPR001356	Homeobox domain
SMART	SM00389	5.3E-9	386	450	IPR001356	Homeobox domain
CDD	cd00086	4.26E-12	386	447	No hit	No description
SuperFamily	SSF46689	6.84E-17	387	452	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-29	389	452	IPR009057	Homeodomain-like
Pfam	PF05920	2.3E-18	403	442	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MATYYNGNSE IQGGDGLQTL VLMNPGYVYY SDAQQSQPQG NFVFLDSNHP GNNPVNNHNH 60 NHHHHISQTP PQQPPPPSGQ TQQFVGIPLS ASPPSSVHSQ HDVSSLHAFI PRAQYMYNPA 120 EMVAAPPREV TPFQQGLSLT LSSQQSRYGS QAARVTSISP TGDDGRAAVG GGGGGSTSSA 180 SGISNNGVHN MLLNSKYLKA TQEILEEVVN VGKGVLKNSD QLTKNLKTPV IGDGGSSSPV 240 TGEGIRDDQS GSKSGGGAEL TTAERQEIQM KKAKLVNMLD EVEQRYRQYH HQMQIVISWF 300 EQAAGIGSAR TYTALALQTI SKQFRCLKDA IMGQIKAASR SLGEEDSLGG GGGKAEGGGS 360 RLKFVDNQLR QQRALQQLGM IQHNAWRPQR GLPERSVSVL RAWLFEHFLH PYPKDSDKHM 420 LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEEVKEQE QNGLDDNKTN KNEQNEENSS 480 SKNEKSVSPE TSNRGGIGFH STKQENLNSF NPPPPMAVPA TVSTSPTTTT TRINFQNPSG 540 FSLIGSLEME GITQFSPKKP RNNDRNQDSD AGFTLTGGNP TDFMGGL

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MATYYNGNSE IQGGDGLQTL VLMNPGYVYY SDAQQSQPQG NFVFLDSNHP GNNPVNNHNH  60
NHHHHISQTP PQQPPPPSGQ TQQFVGIPLS ASPPSSVHSQ HDVSSLHAFI PRAQYMYNPA  120
EMVAAPPREV TPFQQGLSLT LSSQQSRYGS QAARVTSISP TGDDGRAAVG GGGGGSTSSA  180
SGISNNGVHN MLLNSKYLKA TQEILEEVVN VGKGVLKNSD QLTKNLKTPV IGDGGSSSPV  240
TGEGIRDDQS GSKSGGGAEL TTAERQEIQM KKAKLVNMLD EVEQRYRQYH HQMQIVISWF  300
EQAAGIGSAR TYTALALQTI SKQFRCLKDA IMGQIKAASR SLGEEDSLGG GGGKAEGGGS  360
RLKFVDNQLR QQRALQQLGM IQHNAWRPQR GLPERSVSVL RAWLFEHFLH PYPKDSDKHM  420
LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEEVKEQE QNGLDDNKTN KNEQNEENSS  480
SKNEKSVSPE TSNRGGIGFH STKQENLNSF NPPPPMAVPA TVSTSPTTTT TRINFQNPSG  540
FSLIGSLEME GITQFSPKKP RNNDRNQDSD AGFTLTGGNP TDFMGGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	392	450	5	63	Homeobox protein Meis2
3k2a_B	4e-16	392	450	5	63	Homeobox protein Meis2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	351	358	GGKAEGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023749138.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_023749139.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_023749140.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_023749141.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-135	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2J6JH43	0.0	A0A2J6JH43_LACSA; Uncharacterized protein
STRING	EOY08486	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	6e-93	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]