PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016324

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 223aa MW: 25048.3 Da PI: 9.6267

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-15179	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.4	5.9e-49	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF Ptdeelv+++Lk+kv+++++ +i+e+d+++++PwdLp ++e yf+s+ + ky++gkr+nr+t+sgyWkatg dk+++++ +++ Lsa016324 14 LPPGFRFFPTDEELVMHFLKRKVQSRPVAS-PIIAEADVCRSDPWDLPG---DPKQERYFYSNMEIKYPNGKRSNRVTTSGYWKATGLDKQIVDSkNKQI 109 79***********************888.78***********3...356799*******************************9857777 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg kktLvfy+g+ap+g+kt+Wvmhey+l Lsa016324 110 VGSKKTLVFYRGKAPNGSKTNWVMHEYKL 138 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-55	11	156	IPR003441	NAC domain
PROSITE profile	PS51005	54.687	14	156	IPR003441	NAC domain
Pfam	PF02365	3.0E-25	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MEKLNSDNNG GLRLPPGFRF FPTDEELVMH FLKRKVQSRP VASPIIAEAD VCRSDPWDLP 60 GDPKQERYFY SNMEIKYPNG KRSNRVTTSG YWKATGLDKQ IVDSKNKQIV GSKKTLVFYR 120 GKAPNGSKTN WVMHEYKLAN PIQGMENWVI CRMFLKKNGR KSGENDVRVE EAGPIFYDFL 180 AGIPRTGDLN LEPAASSSGS SGVTNASPMA DEGEENSKYM RGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	12	158	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	12	158	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	12	158	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	12	158	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-47	6	158	12	170	NAC domain-containing protein 19
3swm_B	2e-47	6	158	12	170	NAC domain-containing protein 19
3swm_C	2e-47	6	158	12	170	NAC domain-containing protein 19
3swm_D	2e-47	6	158	12	170	NAC domain-containing protein 19
3swp_A	2e-47	6	158	12	170	NAC domain-containing protein 19
3swp_B	2e-47	6	158	12	170	NAC domain-containing protein 19
3swp_C	2e-47	6	158	12	170	NAC domain-containing protein 19
3swp_D	2e-47	6	158	12	170	NAC domain-containing protein 19
4dul_A	1e-47	12	158	15	167	NAC domain-containing protein 19
4dul_B	1e-47	12	158	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023763815.1	1e-167	NAC domain-containing protein 83-like
Swissprot	Q9FY93	1e-71	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2J6LDS1	1e-165	A0A2J6LDS1_LACSA; Uncharacterized protein
STRING	cassava4.1_014491m	6e-85	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-73	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]