PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa016337

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TALE

Protein Properties

Length: 745aa MW: 82212.1 Da PI: 6.7248

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-29145	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.6e-09	575	607	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yps +++ LA+++gLt +qV++WF N R + Lsa016337 575 HPYPSDADKHMLATQTGLTRNQVSNWFINARVR 607 89*****************************87 PP
2	BELL	100.3	1.5e-32	427	495	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e ++kka+Ll ++eeV++rYkqy +q+q+vis+Fe+vagl +++pY+ lAlka+SrhF c+k+ i++q+ Lsa016337 427 EFHRKKARLLYMQEEVCRRYKQYLQQMQMVISAFETVAGLSTSTPYVCLALKAVSRHFHCVKNVISDQL 495 789***************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.3E-43	351	493	IPR006563	POX domain
Pfam	PF07526	1.4E-38	356	492	IPR006563	POX domain
PROSITE profile	PS50071	11.839	548	611	IPR001356	Homeobox domain
CDD	cd00086	9.15E-12	551	612	No hit	No description
SMART	SM00389	1.8E-9	551	615	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-17	553	617	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-27	554	615	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	568	607	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
XISLTLPHPR LSLTPLSSPT SPPHTVPNPL SPAATYPQTH VQNVISQSGV DGAEQSEGRI 60 TCSAEKPATK LRFQQSSGDL NNQHPLHDHP QFEPKDIHRP FSYNTNVFPS EMFNSVARNP 120 HLLLPSGHGF VSHEQDSSPG SSSALGLGSS ERTLISSSGG GGGFVNLANP QNCNDWKTVV 180 SSQQAAASDH WNLISYSNAA ASTSIDQRNL NSGCYGYQQD VHNVPAFGSS PFYHNTLQQD 240 QVTLAQLPHS KDDSVMNHSI PCWMNNSDHE SGLLANRVHE TTMAANEGNC NTQALSLSLS 300 SVPHLKDDQP NLQSGQKPLK SDLLPPNSDP KSFMGVSSIG HRNTGPLGPF TGYATVLKNS 360 KYLKPAQELL NGNCDVGGQD LVQASHDVYS HKILEEEMSR AFSSSDASED PISNRNNNSG 420 CESLRPEFHR KKARLLYMQE EVCRRYKQYL QQMQMVISAF ETVAGLSTST PYVCLALKAV 480 SRHFHCVKNV ISDQLSQMKK MMGETMSMSG NKAACDPDYV TSTSRLKSID QRLEKSGGGS 540 AAFFASQQPV WRPQRGLPER AISVLKTWLF DHFLHPYPSD ADKHMLATQT GLTRNQVSNW 600 FINARVRIWK PMVEEIHTLE TKGLAEPNQP DGQEPNRIEM GSLPNSQQQE YSRNNGILTV 660 VNDHDHDHDQ SNDHEKQATD RPEYNQMQAL TSMDRLMNII PYPRATFDAS GLGPVSLTLG 720 LRQNAEHVQQ LQQHFGGQLI HDFVG

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

XISLTLPHPR LSLTPLSSPT SPPHTVPNPL SPAATYPQTH VQNVISQSGV DGAEQSEGRI  60
TCSAEKPATK LRFQQSSGDL NNQHPLHDHP QFEPKDIHRP FSYNTNVFPS EMFNSVARNP  120
HLLLPSGHGF VSHEQDSSPG SSSALGLGSS ERTLISSSGG GGGFVNLANP QNCNDWKTVV  180
SSQQAAASDH WNLISYSNAA ASTSIDQRNL NSGCYGYQQD VHNVPAFGSS PFYHNTLQQD  240
QVTLAQLPHS KDDSVMNHSI PCWMNNSDHE SGLLANRVHE TTMAANEGNC NTQALSLSLS  300
SVPHLKDDQP NLQSGQKPLK SDLLPPNSDP KSFMGVSSIG HRNTGPLGPF TGYATVLKNS  360
KYLKPAQELL NGNCDVGGQD LVQASHDVYS HKILEEEMSR AFSSSDASED PISNRNNNSG  420
CESLRPEFHR KKARLLYMQE EVCRRYKQYL QQMQMVISAF ETVAGLSTST PYVCLALKAV  480
SRHFHCVKNV ISDQLSQMKK MMGETMSMSG NKAACDPDYV TSTSRLKSID QRLEKSGGGS  540
AAFFASQQPV WRPQRGLPER AISVLKTWLF DHFLHPYPSD ADKHMLATQT GLTRNQVSNW  600
FINARVRIWK PMVEEIHTLE TKGLAEPNQP DGQEPNRIEM GSLPNSQQQE YSRNNGILTV  660
VNDHDHDHDQ SNDHEKQATD RPEYNQMQAL TSMDRLMNII PYPRATFDAS GLGPVSLTLG  720
LRQNAEHVQQ LQQHFGGQLI HDFVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-15	557	615	5	63	Homeobox protein Meis2
3k2a_B	3e-15	557	615	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023753097.1	0.0	BEL1-like homeodomain protein 8 isoform X2
TrEMBL	A0A2J6M1Z6	0.0	A0A2J6M1Z6_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	5e-85	BEL1-like homeodomain 8