PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa016343
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 243aa    MW: 27594.7 Da    PI: 6.4201
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683269PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd++++ G gtW++ ++  g+ R++k+c++rw +yl
        Lsa016343 14 KGAWTPEEDKILVDYITKNGHGTWRSFPKLAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding506.6e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++ + +++ ++G++ W++Ia+ ++ gRt++++k++w+++l
        Lsa016343  67 RGAFSFEEEQTIFHLHSLHGNK-WAAIAAQLP-GRTDNEIKNFWNSHL 112
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.45961IPR017930Myb domain
SuperFamilySSF466891.05E-2812108IPR009057Homeodomain-like
SMARTSM007179.0E-101363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
CDDcd001671.67E-81661No hitNo description
PROSITE profilePS5129424.74862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2565115IPR009057Homeodomain-like
SMARTSM007171.8E-1566114IPR001005SANT/Myb domain
PfamPF002492.9E-1567112IPR001005SANT/Myb domain
CDDcd001675.51E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRAPCCNKG EVKKGAWTPE EDKILVDYIT KNGHGTWRSF PKLAGLQRCG KSCRLRWTNY  60
LRPDIKRGAF SFEEEQTIFH LHSLHGNKWA AIAAQLPGRT DNEIKNFWNS HLRKRIPSLQ  120
TDLPSNSTDT KSNRVENDAK PEDEAKPSMN PMSHSDNFHH EWGSGAFQKD FHKVTTYGIP  180
NPIKIEPVSF VTVQASESCD QSVKEEMTNG SESQNSNEAQ NELDITLDLL LDFPNDGEYL  240
QYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023748090.10.0transcription factor MYB41-like
RefseqXP_023748091.10.0transcription factor MYB41-like
TrEMBLA0A2J6JJH70.0A0A2J6JJH7_LACSA; Uncharacterized protein
STRINGPOPTR_0012s13240.11e-68(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-68myb domain protein 17